Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,249,905 – 3,249,995 |
Length | 90 |
Max. P | 0.809826 |
Location | 3,249,905 – 3,249,995 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 88.58 |
Mean single sequence MFE | -32.84 |
Consensus MFE | -23.06 |
Energy contribution | -23.14 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.21 |
Mean z-score | -2.40 |
Structure conservation index | 0.70 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.809826 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3249905 90 - 22407834 UUUCAAUUGUGCCUCGAGCCGUAAGGGGCUAACCCUUGGGCU-UGGAUUUU-CGAGCUGAGCAAAUACUACGGCAUGGCAUUCAUAAUUGUG ...(((((((((((((((((.((((((.....))))))))))-))).....-...((((((......)).))))..)))))....))))).. ( -32.20) >DroSec_CAF1 84010 90 - 1 UUUCAAUUGUGCCUCGAGCCUUAAGGGGCUAACCCUUGGGCU-UGGGCUUU-CGAGCUGAGCAAAUACUACGGCCUGGCAUCCAUAAUUGUG ...((((((((((.(((((((.(((((.....))))))))))-)))))..(-((.((((((......)).)))).))).....))))))).. ( -33.90) >DroSim_CAF1 87124 90 - 1 UUUCAAUUGUGCCUCGAGCCUUAAGGGGCUAACCCUUGGGCU-UGGGCUUU-CGAGCUGAGCAAAUACUACGGCCUGGCAUCCAUAAUUGUG ...((((((((((.(((((((.(((((.....))))))))))-)))))..(-((.((((((......)).)))).))).....))))))).. ( -33.90) >DroEre_CAF1 80769 90 - 1 UUUCAAUUGUGCCUCGGGUUCUGAGGGGAUAGCCCUUGGG-UUGGGGUUUU-CGAGCUGAGCAAAUACUACGGCACGGCAUCCAUAAUUGUG ...((((((((((((((...)))))).((.((((((....-..)))))).)-)..((((.((..........)).))))...)))))))).. ( -29.50) >DroYak_CAF1 80026 92 - 1 UUUCAAUUGUGCCUCGGCUGCUGAGGGGCUAACCCUUGGGCUUGGGGUUUUGCGAGCUGAGCAAAUACUGGGGCAGGGGAUCCAUAAUUGUG ...((((((((((((.....(..((((.....))))..)((((.((..(((((.......)))))..)).)))).))))...)))))))).. ( -34.70) >consensus UUUCAAUUGUGCCUCGAGCCCUAAGGGGCUAACCCUUGGGCU_UGGGUUUU_CGAGCUGAGCAAAUACUACGGCAUGGCAUCCAUAAUUGUG ...((((((((((...(((((.(((((.....))))))))))..))......((.((((((......)).)))).)).....)))))))).. (-23.06 = -23.14 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:52 2006