Locus 1216

Sequence ID 2L_DroMel_CAF1
Location 3,249,482 – 3,249,580
Length 98
Max. P 0.614496
window1991

overview

Window 1

Location 3,249,482 – 3,249,580
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 96.60
Mean single sequence MFE -18.50
Consensus MFE -17.79
Energy contribution -17.90
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.57
Structure conservation index 0.96
SVM decision value 0.16
SVM RNA-class probability 0.614496
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3249482 98 + 22407834
UCCCGUCUACUUUUUAUUUUAUAUUUUUUCACCCCUCCCGACAUCACUUUUUUGCAACUCCUUUGUUUUGCGGAGGCGGUCCAAUGAAUUGGUGUAAA
.................((((((((..(((((((((((.(....)........((((..(....)..))))))))).))).....)))..)))))))) ( -18.70)
>DroSec_CAF1 83560 98 + 1
UCCUGUCUACUUUUUAUUUUAUAUUUUUUCACCCCUCCCGACUUCACUUUUUUGCAGCUCCUUUGUUUUGCGGAGGCGGUCCAAUGAAUUGGUGUAAA
.................((((((((..(((((((((((.(....)........(((((......))..)))))))).))).....)))..)))))))) ( -18.70)
>DroSim_CAF1 86675 98 + 1
UCCUGUCUACUUUUUAUUUUAUAUUUUUUCACCCCUCCCGACUUCACUUUUUUGCAGCUCCUUUGUAUGGCGGAGGCGGUCCAAUGAAUUGGUGUAAA
.................((((((((..((((......(((.((((.((....(((((.....))))).)).)))).))).....))))..)))))))) ( -18.10)
>consensus
UCCUGUCUACUUUUUAUUUUAUAUUUUUUCACCCCUCCCGACUUCACUUUUUUGCAGCUCCUUUGUUUUGCGGAGGCGGUCCAAUGAAUUGGUGUAAA
.................((((((((..(((((((((((.(....)........(((((......))..)))))))).))).....)))..)))))))) (-17.79 = -17.90 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:51 2006