Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,247,466 – 3,247,585 |
Length | 119 |
Max. P | 0.820032 |
Location | 3,247,466 – 3,247,585 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.76 |
Mean single sequence MFE | -38.84 |
Consensus MFE | -30.22 |
Energy contribution | -29.14 |
Covariance contribution | -1.08 |
Combinations/Pair | 1.19 |
Mean z-score | -1.90 |
Structure conservation index | 0.78 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.820032 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3247466 119 + 22407834 CUGCGAUGGCAACUCAUGUGUUAUGGCAUUCUUUUGUCUUGCGACGGGCCAAAUUAUAUGCUGACACAGCGGGGAAACACACAGAUUCUACCCCCAUGGGGAAAGCC-CCAUCCGGAAAA ((((((.(....))).((((((..(((((...((((.((((...)))).))))....)))))))))))))))(....).............((..((((((....))-))))..)).... ( -34.80) >DroSec_CAF1 81534 118 + 1 CUGCGAUGGCAACUCAUGUGUUAUGGCAUUCUUUUGUCUUGCGACGAGCCAAAUUAUAUGCUGACACAGCGGGGAAAUACACAGAUUUU-CCCCCAUGGGGAAAGUC-CCAUCCGGAAAA (((.(((((...(((.((((((..(((((...((((.((((...)))).))))....)))))))))))..)))..........((((((-((((...))))))))))-)))))))).... ( -41.60) >DroSim_CAF1 84661 118 + 1 CUGCGAUGGCAACUCAUGUGUUAUGGCAUUCUUUUGUCUUGCGACGAGCCAAAUUAUAUGCUGACACAGCGGGGAAACACACAGAUUUU-CCCCCAUGGGGAAAGCC-CCAUCCGGAAAA ((((((.(....))).((((((..(((((...((((.((((...)))).))))....)))))))))))))))(....).......((((-((...((((((....))-))))..)))))) ( -38.30) >DroEre_CAF1 78291 118 + 1 CUGCGAUGGGAACUCAUGUGUUAUGGCAUUCUUUUGUCUUGCGACGGGCCAAAUUAUACGCUGACACAGCGGGAAAGCACACAGAUUUC-CCCCCAUGGGGAAAACC-CCAUUCGGAGAG ((.(((((((......((((((.((((......(((((....))))))))).......(((((...)))))....))))))....((((-(((....)))))))..)-))).))).)).. ( -40.30) >DroYak_CAF1 77547 119 + 1 CUGCGAUGGGAACUCAUGUGUUAUGGCAUUCUUUUGUCUUGCGACGGGCCAAAUUAUACGCUGACACAGCGGGAAAGCGCACAGAUUUU-CCGCCAUGGGGAAAACCCCCAUUCGGCAAA .......(((((.((.(((((..((((......(((((....))))))))).......(((((...))))).......))))))).)))-))(((((((((.....))))))..)))... ( -39.20) >consensus CUGCGAUGGCAACUCAUGUGUUAUGGCAUUCUUUUGUCUUGCGACGGGCCAAAUUAUAUGCUGACACAGCGGGGAAACACACAGAUUUU_CCCCCAUGGGGAAAGCC_CCAUCCGGAAAA (((.(((((.......((((((.((((......(((((....))))))))).......(((((...)))))....)))))).........((((...)))).......)))))))).... (-30.22 = -29.14 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:45 2006