| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,246,539 – 3,246,644 |
| Length | 105 |
| Max. P | 0.849654 |
| Location | 3,246,539 – 3,246,644 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 89.71 |
| Mean single sequence MFE | -35.47 |
| Consensus MFE | -26.37 |
| Energy contribution | -29.70 |
| Covariance contribution | 3.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.17 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.849654 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3246539 105 - 22407834 GCCACGCCCACAGCCAGCAGUCCAAACCCUUUUUGCCGCCCCUCUACAACCCUCUUCACUUAUUUACCCAGUCAACUGUUCAGGCAUUCACUCUUGCCCGUGGCA------------ ((((((......((..((((............)))).)).............................(((....)))....((((........)))))))))).------------ ( -20.20) >DroSec_CAF1 80601 116 - 1 GCCACGCCCACAGCCAGCAGUCCCAACCCUU-UGGCCGCCCCUCUACAACCCUCUUCACUUAUUUACCCAGUCAACUGUUCAGGCAUUCACUUUUGCCCGGGGCACAGGGGCGUGGG .((((((((...(((((.((........)))-)))).(((((..........................(((....)))....((((........)))).)))))....)))))))). ( -42.90) >DroSim_CAF1 83741 116 - 1 GCCACGCCCAGAGCCAGCAGUCCAAACCCUU-UGGCCGCCCCUCUACAACCCUCUUCACUUAUUUACCCAGUCAACUGUUCAGGCAUUCACUUUUGCCCGGGGCACAGGGGCGUGGG .((((((((.(.(((((.((........)))-)))))(((((..........................(((....)))....((((........)))).)))))....)))))))). ( -43.30) >consensus GCCACGCCCACAGCCAGCAGUCCAAACCCUU_UGGCCGCCCCUCUACAACCCUCUUCACUUAUUUACCCAGUCAACUGUUCAGGCAUUCACUUUUGCCCGGGGCACAGGGGCGUGGG .((((((((...((((..((........))..)))).(((((..........................(((....)))....((((........)))).)))))....)))))))). (-26.37 = -29.70 + 3.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:42 2006