Locus 121

Sequence ID 2L_DroMel_CAF1
Location 380,817 – 380,917
Length 100
Max. P 0.712724
window187

overview

Window 7

Location 380,817 – 380,917
Length 100
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 98.00
Mean single sequence MFE -27.02
Consensus MFE -25.92
Energy contribution -25.73
Covariance contribution -0.19
Combinations/Pair 1.04
Mean z-score -1.79
Structure conservation index 0.96
SVM decision value 0.38
SVM RNA-class probability 0.712724
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 380817 100 + 22407834
CUUAUCGCACCUGGUCCAAAAGACGGCGCCAAGAAACAAACAACCCAACAACUGGAAGGUGAAUGGAGGGCUCAGGUGCAGCUUAAAUGAGAUAAACACU
.((((((((((((((((.......(....)..............(((...(((....)))...))).)))).)))))))..(......).)))))..... ( -25.90)
>DroSec_CAF1 48496 100 + 1
CUUAUCGCACCUGGUCCAAAAGACGGCGCCAAGAAACAAACAACCCAACAACUGGAAGGUGAAUGGAGGGCUCAGGUGCAGCUUAAAUGGGAUAAACACC
.((((((((((((((((.......(....)..............(((...(((....)))...))).)))).)))))))..((.....)))))))..... ( -26.60)
>DroSim_CAF1 49147 100 + 1
CUUAUCGCACCUGGUCCAAAAGACGGCGCCAAGAAACAAACAACCCAACAACUGGAAGGUGAAUGGAGGGCUCAGGUGCAGCUUAAAUGGGAUAAACACU
.((((((((((((((((.......(....)..............(((...(((....)))...))).)))).)))))))..((.....)))))))..... ( -26.60)
>DroYak_CAF1 49724 100 + 1
CUUAUCGCACCUGGUCCAAAAGACGGCGCCAAGAAACAAACAACCCAACAACUGGAAGGCGAGUGGAGGGCUCAGGUGCAGCUUAAAUGGGAUAAACACU
.((((((((((((((((.....((..((((..(.......)...(((.....)))..)))).))...)))).)))))))..((.....)))))))..... ( -29.00)
>consensus
CUUAUCGCACCUGGUCCAAAAGACGGCGCCAAGAAACAAACAACCCAACAACUGGAAGGUGAAUGGAGGGCUCAGGUGCAGCUUAAAUGGGAUAAACACU
.((((((((((((((((.........((((..(.......)...(((.....)))..))))......)))).)))))))..(......).)))))..... (-25.92 = -25.73 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:32 2006