Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,244,373 – 3,244,488 |
Length | 115 |
Max. P | 0.500000 |
Location | 3,244,373 – 3,244,488 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.39 |
Mean single sequence MFE | -38.36 |
Consensus MFE | -31.32 |
Energy contribution | -31.36 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.31 |
Structure conservation index | 0.82 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3244373 115 + 22407834 -AGCGUUGAUUUAUGCAAACAGCCGGCGUGAUGUGAGUGAAUUAACGCGUCUGCGAGUAAAACUCUGCUAAUGGCAGUGGCAACAGCCGUGGGGCUGG----UGAUCCAAGGGAGGGGCG -.((((((((((((.((....((....))....)).))))))))))))(((((((((.....))).))......(..(((((.(((((....))))).----))..)))..)...)))). ( -36.40) >DroSec_CAF1 78432 115 + 1 -AGCGUUGAUUUAUGCAAACAGCCGGCGUGAUGUGAGUGAAUUAACGCGUCUGCGAGUAAAACUCUGCUAAUGGCAGUGGCAACAGCCGUGGGGCAGG----AGACCCAAGGGAGGGGCG -.((((((((((((.((....((....))....)).))))))))))))....((........(((((((.(((((..((....)))))))..)))).)----)).(((......))))). ( -40.50) >DroSim_CAF1 81573 115 + 1 -AGCGUUGAUUUAUGCAAACAGCCGGCGUGAUGUGAGUGAAUUAACGCGUCUGCGAGUAAAACUCUGCUAAUGGCAGUGGCAACAGCCGUGGGGCAGG----AGAUCCAAGGGAGGGCCG -.((((((((((((.((....((....))....)).))))))))))))((((..........(((((((.(((((..((....)))))))..)))).)----)).(((...))))))).. ( -37.50) >DroEre_CAF1 75364 114 + 1 -AGCGUUGAUUUAUGCAAACAGCCGGCGCGAUGUGAGUGAAUUAACGCGUCUGCGAGUAAAACUCUGCUAAUGGCAGUGGCAACAGCCGUGGG-CCAGAGAAGGGUUCAAGUA----GGG -.((((((((((((.((....((....))....)).)))))))))))).(((((......((((((.....((((..((((....))))...)-)))....))))))...)))----)). ( -39.40) >DroYak_CAF1 74488 112 + 1 UAGCGUUGAUUUAUGCAAACAGCCGGCGUGAUGUGAGUGAAUUAACGCGUCUGCGAGUAAAACUCUGCUAAUGGCAGUGGCAACAGCCGUGGGGCCAG----GGCUCCAAGAA----GGG ..((((((((((((.((....((....))....)).)))))))))))).((((((((.....))).))..(((((..((....)))))))(((((...----.))))).))).----... ( -38.00) >consensus _AGCGUUGAUUUAUGCAAACAGCCGGCGUGAUGUGAGUGAAUUAACGCGUCUGCGAGUAAAACUCUGCUAAUGGCAGUGGCAACAGCCGUGGGGCAGG____AGAUCCAAGGGAGGGGCG ..((((((((((((.((....((....))....)).))))))))))))(((((((((.....))).))..(((((..((....))))))).))))......................... (-31.32 = -31.36 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:32 2006