Locus 1206

Sequence ID 2L_DroMel_CAF1
Location 3,243,869 – 3,243,981
Length 112
Max. P 0.654385
window1968

overview

Window 8

Location 3,243,869 – 3,243,981
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.64
Mean single sequence MFE -40.38
Consensus MFE -29.02
Energy contribution -28.62
Covariance contribution -0.40
Combinations/Pair 1.19
Mean z-score -1.96
Structure conservation index 0.72
SVM decision value 0.25
SVM RNA-class probability 0.654385
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3243869 112 + 22407834
UUUUCGCCGCGGAAACUGUCGCCGAAAUCCCGGAGGCGUUCCGCAAUUCCUUUGUUCGUGGUAAAACCCAUAUUUGUGUUUUCGGG-GGCGGAGGCUUUUGUCGGUUUUCG-------GU
.....(((((((((...(((.(((......))).))).))))))....(((((((((.(((..((((.((....)).))))))).)-))))))))........))).....-------.. ( -35.90)
>DroSec_CAF1 77935 112 + 1
UUUUGGCCGCGGAAACUGUCGCCGAAAACCCGGAGGCGUUCCGCAAUUCCUUUGUUCGUGGUAAAACCUAUAUUUGUGUUUUCGGG-GGCGGAGGCUUCUGCCGGUUUUCG-------GU
....(((...(....).)))(((((((((((((((((.((((((...((((..(..((..(............)..))..)..)))-))))))))))))))..))))))))-------)) ( -40.60)
>DroSim_CAF1 81077 112 + 1
UUUUGGCCGCGGAAACUGUCGCCGAAAACCCGGAGGCGUUCCGCAAUUCCUUUGUUCGUGGUAAAACCUAUAUUUGUGUUUUCGGG-GGCGGAGGCUUUUGUCGGUUUUCG-------GU
....(((...(....).)))(((((((((((((((((.((((((...((((..(..((..(............)..))..)..)))-))))))))))))))..))))))))-------)) ( -37.90)
>DroEre_CAF1 74884 114 + 1
UUUUGGCCACGGAAACUGUGGCCAAAAACCCAGAGGCGGGUCACAAUUCCUUUGUUCGUGGCAAAACCUAUAUUUGUGUUUUCGGGGGACGGAGGCUUUUGUCGGUUUUUG------GGU
(((((((((((....).))))))))))((((((((((.((.((.((..(((((((((.(.(.((((((.......).)))))).).)))))))))..)))))).)))))))------))) ( -49.60)
>DroYak_CAF1 73998 120 + 1
UUUUGGCCGCGGAAACUGUCGCCGAAAACCCAGAGGCGUUCCACAAUUCCUUUGUUCGUGGUAAAACCUAUAUUUGUGUUUUCGAGGGGCGAAGACUUUUGUCGGUUUUCGGUUUUCGUU
........((((((((((((.((((((((.((((((..(((((((((......))).)))).))..)))....))).))))))).).)))(((((((......)))))))))))))))). ( -37.90)
>consensus
UUUUGGCCGCGGAAACUGUCGCCGAAAACCCGGAGGCGUUCCGCAAUUCCUUUGUUCGUGGUAAAACCUAUAUUUGUGUUUUCGGG_GGCGGAGGCUUUUGUCGGUUUUCG_______GU
(((((((.(((....).)).))))))).((((((((((....((((.....))))..((((......)))).....))))))))))...((((((((......))))))))......... (-29.02 = -28.62 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:29 2006