Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,242,847 – 3,242,964 |
Length | 117 |
Max. P | 0.959485 |
Location | 3,242,847 – 3,242,964 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.71 |
Mean single sequence MFE | -24.90 |
Consensus MFE | -21.04 |
Energy contribution | -21.04 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.93 |
Structure conservation index | 0.84 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.959485 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3242847 117 - 22407834 CUGCUAUUUUGUAAUGAAAGCAUAACAAAAACAGAAACGUAACACGGG--AACAGAUGAAAAUCUCUGCAUGAGAAAUGUCUGCUGAACGGCAA-CCAUCCAAAGCCGAGCACAACCCCA (((...((((((.(((....))).)))))).)))...........(((--..((((((....((((.....))))..)))))).((..((((..-.........))))..))....))). ( -25.10) >DroSec_CAF1 76953 117 - 1 CUGCUAUUUUGUAAUGAAAGCAUAACAAAAACAGAAACGUAACACGGG--AACAGAUGAAAAUCUCUGCAUGAGAAAUGUCUGCUCAACGGCAA-CCAUCCAAAGCCGAGCACAACCCCA (((...((((((.(((....))).)))))).)))...........(((--...((((....)))).(((.((((.........)))).((((..-.........)))).)))....))). ( -24.90) >DroSim_CAF1 80108 117 - 1 CUGCUAUUUUGUAAUGAAAGCAUAACAAAAACAGAAACGUAACACGGG--AACAGAUGAAAAUCUCUGCAUGAGAAAUGUCUGCUCAACGGCAA-CCAUCCAAAGCCGAGCACAACCCCA (((...((((((.(((....))).)))))).)))...........(((--...((((....)))).(((.((((.........)))).((((..-.........)))).)))....))). ( -24.90) >DroEre_CAF1 73869 116 - 1 CUGCUAUUUUGUAAUGAAAGCAUAACAAAAACAGAAACGUAACAC---AGAACAGAUGAAAAUCUCUGCAUGAGAAAUGUCUGCUCAGCGGCAA-CCAUCCAAAGCCGAGCACAACCCCA .((((.((((((.(((....))).))))))...............---.((.((((((....((((.....))))..)))))).))..((((..-.........))))))))........ ( -23.20) >DroYak_CAF1 72980 120 - 1 CUGCUAUUUUGUAAUGAAAGCAUAACAAAAACAGAAACGUAACACUGGAGCACAGAUGAAAAUCUCUGCAUGAGAAAUGUCUGCUCAACGGCAAGCCACCGAAAGCCGAGCACAACCCCA (((...((((((.(((....))).)))))).)))............((.(((.((((....)))).)))............(((((...((....))..(....)..))))).....)). ( -26.40) >consensus CUGCUAUUUUGUAAUGAAAGCAUAACAAAAACAGAAACGUAACACGGG__AACAGAUGAAAAUCUCUGCAUGAGAAAUGUCUGCUCAACGGCAA_CCAUCCAAAGCCGAGCACAACCCCA .((((.((((((.(((....))).))))))......................((((((....((((.....))))..)))))).....((((............))))))))........ (-21.04 = -21.04 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:24 2006