Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,241,818 – 3,241,928 |
Length | 110 |
Max. P | 0.692961 |
Location | 3,241,818 – 3,241,928 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 93.95 |
Mean single sequence MFE | -28.92 |
Consensus MFE | -22.06 |
Energy contribution | -22.30 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.94 |
Structure conservation index | 0.76 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.692961 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3241818 110 + 22407834 AAAUUUCUGGCUAUCAACACUCUGCGGGGCACCGAGGCCCAGUUGGGAUAA--GCAAACUGGGUCGAGACGAAGGUAAAUAUGUA----GAAAAACGCAUACUAAAUGCACAAAUA ...((((((..........(((..(((....))).(((((((((.......--...))))))))))))((....)).......))----))))...((((.....))))....... ( -30.10) >DroSec_CAF1 75922 110 + 1 AAAUUUCUGGCUAUCAACACUCUGCGGGGCACCGAGGCCCAGUUGGGAUAA--GCAAACUGGGUCGAGACGAAGGUAAAUAUAUA----GAAACACGCAUACUAAAUGCACAAAUA ...((((((..........(((..(((....))).(((((((((.......--...))))))))))))((....)).......))----))))...((((.....))))....... ( -29.90) >DroSim_CAF1 77682 110 + 1 AAAUUUCUGGCUAUCAACACUCUGCGGGGCACCGAGGCCCAGUUGGGAUAA--GCAAACUGGGUCGAGACGAAGGUAAAUAUAUA----GAAAAACGCGUACUAAAUGCACAAAUA ...((((((..........(((..(((....))).(((((((((.......--...))))))))))))((....)).......))----))))...((((.....))))....... ( -29.80) >DroEre_CAF1 72928 110 + 1 AAAUUUCUGGCUAUCAACACUCUGCGGGGCACCAAGGCCCAGUUCGGAUAA--GCAAACUGGGUCGAGAGGAUGGUAAAUAUAUA----GAAAAACGCAUACUAAAUGCACAAAUA ...((((((((((((....(((...((....))..(((((((((.(.....--.).))))))))))))..)))))).......))----))))...((((.....))))....... ( -31.21) >DroYak_CAF1 71996 116 + 1 AAAUUUCUGGCUAUCAACACUCUGCGGGGCACCAAGGCGCAGUUGGGAUAACUGCAAACUGGGUCGAGACGAUGCUAAAAAUAUAUAGGGAAAAACGCAUACUAAAUGCACAAAUA ..((((.((((.(((....(((...((....))..(((.(((((............))))).))))))..))))))).))))..............((((.....))))....... ( -23.60) >consensus AAAUUUCUGGCUAUCAACACUCUGCGGGGCACCGAGGCCCAGUUGGGAUAA__GCAAACUGGGUCGAGACGAAGGUAAAUAUAUA____GAAAAACGCAUACUAAAUGCACAAAUA .........(((.((....(((...((....))..(((((((((.(........).))))))))))))..)).)))....................((((.....))))....... (-22.06 = -22.30 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:23 2006