Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,239,953 – 3,240,073 |
Length | 120 |
Max. P | 0.993597 |
Location | 3,239,953 – 3,240,073 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.17 |
Mean single sequence MFE | -28.06 |
Consensus MFE | -25.38 |
Energy contribution | -25.38 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.08 |
Mean z-score | -1.94 |
Structure conservation index | 0.90 |
SVM decision value | 2.41 |
SVM RNA-class probability | 0.993597 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3239953 120 + 22407834 GGUGUUGCUUCUAAUUUGCAUAGUAGUUCGCAAUAGUUUGCAAAUUUACAGGCUUUUAUGUGCUAUAAUUAAUCAUGCUCCGUUUUGAUUGCGAAUUGGUAAGCCAAUUAUAUUUGAUUU ......(((((((((((((...(((((.((.((.((((((........)))))).)).)).)))))....(((((..........)))))))))))))).))))(((......))).... ( -25.70) >DroSec_CAF1 74111 120 + 1 GGUGUUGCUUCUAAUUUGCAUAGUAGUUCGCAAUAGUUUGCAAAUUUGCAAGCUUUUAUGUGCUAUAAUUAAUCAUGCUCCGUUUUGAUUGCGAAUUGGUAAGCCAAUUAUAUUUGAUUC ......(((((((((((((...(((((.((.((.((((((((....)))))))).)).)).)))))....(((((..........)))))))))))))).))))(((......))).... ( -30.80) >DroSim_CAF1 75822 120 + 1 GGUGUUGCUUCUAAUUUGCAUAGUAGUUCGCAAUAGUUUGCAAAUUUUCAGGCUUUUAUGUGCUAUAAUUAAUCAUGCUCCGUUUUGAUUGCGAAUUGGUAAGCCAAUUAUAUUUGAUUC ......(((((((((((((...(((((.((.((.((((((........)))))).)).)).)))))....(((((..........)))))))))))))).))))(((......))).... ( -25.10) >DroEre_CAF1 71121 120 + 1 GAUGUUGCUUCUAAUUUGCAUAGUAGUUUGCAAUAGUUUGCAAAUUUGCAUGCUUUCAUGUGUUAUAAUUAAUCAUGCUCCGUUUUGAUUGCGAAUUGGUAAGCCAAUUAUAUUUGAUUC ......((((((((((((((..(((((((((((....))))))).)))).......((((.((((....))))))))............)))))))))).))))(((......))).... ( -27.80) >DroYak_CAF1 70149 120 + 1 GAUGUUGCUUCUAAUUUGCAUAGUAGUUUGCAAUAGUUUGCAAAUUUGCAGGCUUUCAUGUGUUAUAAUUAAUCAUGCUCCGUUUUGAUUGCGAAUUGGUAAGCCAAUUACAUUUGAUUC (((((.((((((((((((((..(((((((((((....))))))).)))).((....((((.((((....))))))))..))........)))))))))).)))).....)))))...... ( -30.90) >consensus GGUGUUGCUUCUAAUUUGCAUAGUAGUUCGCAAUAGUUUGCAAAUUUGCAGGCUUUUAUGUGCUAUAAUUAAUCAUGCUCCGUUUUGAUUGCGAAUUGGUAAGCCAAUUAUAUUUGAUUC ......(((((((((((((...((((..((((..((((((((....))))))))....))))))))....(((((..........)))))))))))))).))))(((......))).... (-25.38 = -25.38 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:22 2006