Locus 120

Sequence ID 2L_DroMel_CAF1
Location 380,118 – 380,213
Length 95
Max. P 0.566959
window186

overview

Window 6

Location 380,118 – 380,213
Length 95
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 97.56
Mean single sequence MFE -28.70
Consensus MFE -28.00
Energy contribution -28.25
Covariance contribution 0.25
Combinations/Pair 1.03
Mean z-score -1.54
Structure conservation index 0.98
SVM decision value 0.07
SVM RNA-class probability 0.566959
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 380118 95 - 22407834
UGGUGAAUGGCGAUGCUGUAGCUACAAGCUUAGCCCGUGUUGGUGAUGUUGAUGCGGGGCCAAUUACUCAUAAAAAGCAUGUUAAGAACAGCAGU-
.(((((.((((...((((.(((.....)))))))((((((..(.....)..)))))).)))).)))))........((.(((.....)))))...- ( -28.20)
>DroSec_CAF1 47780 95 - 1
UGGUGAAUGGCGAUGCUGUAGCUACAAGCUUAGCCCGUGUUGGUGAUGUUGAUGCGGGGCCAAUUACUCAUAAAAUGCAUGUUAAGAACAGCAGU-
.(((((.((((...((((.(((.....)))))))((((((..(.....)..)))))).)))).))))).......(((.(((.....))))))..- ( -29.00)
>DroSim_CAF1 48430 96 - 1
UGGUGAAUGGCGAUGCUGUAGCUACAAGCUUAGCCCGUGUUGGUGAUGUUGAUGCGGGGCCAAUAACUCAUAAAAGGCAUGUUAAGAACAGCCGUC
.(((...((((...((((.(((.....)))))))((((((..(.....)..)))))).))))...))).......(((.(((.....))))))... ( -28.60)
>DroEre_CAF1 54748 95 - 1
UGGUGAAUGGCGAUGCUGUAGCUACAAGCUUAGCCCGUGUUGGUGAUGUUGAUGCGGGGCCAAUUACUCAUAAAAUGCAUGUUAAGAACAGCAGU-
.(((((.((((...((((.(((.....)))))))((((((..(.....)..)))))).)))).))))).......(((.(((.....))))))..- ( -29.00)
>consensus
UGGUGAAUGGCGAUGCUGUAGCUACAAGCUUAGCCCGUGUUGGUGAUGUUGAUGCGGGGCCAAUUACUCAUAAAAUGCAUGUUAAGAACAGCAGU_
.(((((.((((...((((.(((.....)))))))((((((..(.....)..)))))).)))).))))).......(((.(((.....))))))... (-28.00 = -28.25 +   0.25) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:31 2006