Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 380,118 – 380,213 |
Length | 95 |
Max. P | 0.566959 |
Location | 380,118 – 380,213 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 97.56 |
Mean single sequence MFE | -28.70 |
Consensus MFE | -28.00 |
Energy contribution | -28.25 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.03 |
Mean z-score | -1.54 |
Structure conservation index | 0.98 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.566959 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 380118 95 - 22407834 UGGUGAAUGGCGAUGCUGUAGCUACAAGCUUAGCCCGUGUUGGUGAUGUUGAUGCGGGGCCAAUUACUCAUAAAAAGCAUGUUAAGAACAGCAGU- .(((((.((((...((((.(((.....)))))))((((((..(.....)..)))))).)))).)))))........((.(((.....)))))...- ( -28.20) >DroSec_CAF1 47780 95 - 1 UGGUGAAUGGCGAUGCUGUAGCUACAAGCUUAGCCCGUGUUGGUGAUGUUGAUGCGGGGCCAAUUACUCAUAAAAUGCAUGUUAAGAACAGCAGU- .(((((.((((...((((.(((.....)))))))((((((..(.....)..)))))).)))).))))).......(((.(((.....))))))..- ( -29.00) >DroSim_CAF1 48430 96 - 1 UGGUGAAUGGCGAUGCUGUAGCUACAAGCUUAGCCCGUGUUGGUGAUGUUGAUGCGGGGCCAAUAACUCAUAAAAGGCAUGUUAAGAACAGCCGUC .(((...((((...((((.(((.....)))))))((((((..(.....)..)))))).))))...))).......(((.(((.....))))))... ( -28.60) >DroEre_CAF1 54748 95 - 1 UGGUGAAUGGCGAUGCUGUAGCUACAAGCUUAGCCCGUGUUGGUGAUGUUGAUGCGGGGCCAAUUACUCAUAAAAUGCAUGUUAAGAACAGCAGU- .(((((.((((...((((.(((.....)))))))((((((..(.....)..)))))).)))).))))).......(((.(((.....))))))..- ( -29.00) >consensus UGGUGAAUGGCGAUGCUGUAGCUACAAGCUUAGCCCGUGUUGGUGAUGUUGAUGCGGGGCCAAUUACUCAUAAAAUGCAUGUUAAGAACAGCAGU_ .(((((.((((...((((.(((.....)))))))((((((..(.....)..)))))).)))).))))).......(((.(((.....))))))... (-28.00 = -28.25 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:31 2006