Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 55,593 – 55,711 |
Length | 118 |
Max. P | 0.998117 |
Location | 55,593 – 55,711 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 66.30 |
Mean single sequence MFE | -29.70 |
Consensus MFE | -18.02 |
Energy contribution | -17.37 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.33 |
Mean z-score | -1.87 |
Structure conservation index | 0.61 |
SVM decision value | 3.01 |
SVM RNA-class probability | 0.998117 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 55593 118 + 22407834 AUCAAA--AAGGUUUAUGCAGCAAAUAGCAUUAAAACUGUGAGAUCAGUUUGCGUAGAAAUAGACGAACGGACACGGCUAUAUAGAGCCGGCCGUUGAUACUGCUCAAUUAAUGUGGUCG (((...--....(((((((.((.....))....((((((......)))))))))))))........(((((...(((((......))))).))))))))((..(.........)..)).. ( -31.10) >DroSec_CAF1 28498 97 + 1 CUCAAAAAAAGGUUUAUGCAGCACAUAGCAUUAAAACUGUGAGAUCAGUUUGCGUAGAAUUAGACGAACGGGCAUGGCUAUAUCGAGUCAGCCGUCA----------------------- ............(((((((.((.....))....((((((......)))))))))))))....(((.....(((.(((((......))))))))))).----------------------- ( -23.90) >DroEre_CAF1 30024 108 + 1 -------AAAGUUUCAUGCAGU---UAGUUUCAAAACUGUGAGACCAGUUUCCGUAGAAAUGAACGGACGGACAUGAGU--AUCGACACGGCCGUUGAUACUGAUCACUUAAUGUGGUCG -------...(((((..(((((---(........)))))))))))..((((((((........)))))..)))...(((--((((((......)))))))))((((((.....)))))). ( -34.10) >consensus _UCAAA_AAAGGUUUAUGCAGCA_AUAGCAUUAAAACUGUGAGAUCAGUUUGCGUAGAAAUAGACGAACGGACAUGGCUAUAUCGAGACGGCCGUUGAUACUG_UCA_UUAAUGUGGUCG ...........((((((((........))....((((((......))))))........)))))).(((((...(((((......))))).)))))........................ (-18.02 = -17.37 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:13 2006