Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,237,210 – 3,237,317 |
Length | 107 |
Max. P | 0.570474 |
Location | 3,237,210 – 3,237,317 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 87.96 |
Mean single sequence MFE | -30.90 |
Consensus MFE | -20.17 |
Energy contribution | -22.05 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.16 |
Mean z-score | -1.92 |
Structure conservation index | 0.65 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570474 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3237210 107 + 22407834 ------------UCCCUGGAAAAAAUUGCUGUUGCACGGCAAUUUUCAUGCGAGUUUCGUGCCACCAAUUGCAAAAUUAUUUCGUAUUUGUUUUGGGGCUCAUUAACAUGAAAAUGUUG ------------.(((..(((((((((((((.....)))))))))).(((((((.....(((........))).......)))))))...)))..))).....((((((....)))))) ( -30.20) >DroSec_CAF1 71346 119 + 1 UCCUGACUCAAUUCCCUGGAAAAAAUUGCUGUUGCAUGGCAAUUUUCAUGCGAGUUUCGGGCCACCAAUUGCCAAAUUAUUUCGUUUUUGUUUUGGGGCUCAUUAACAUGAAAAUGUUG ....(((((..(((....)))(((((((((((...))))))))))).....)))))..(((((.((((....((((..........))))..)))))))))..((((((....)))))) ( -31.40) >DroSim_CAF1 73039 119 + 1 UCCUGACUCAAUUCCCUGGAAAAAAUUGCUGCUGCAUGGCAAUUUUCAUGCGAGUUUCGGGCCACCAAUUGCCAAAUUAUUUCGUAUUUGUUUUGGGGCUCAUUAACAUGAAAAUGUUG ....(((((..(((....)))(((((((((.......))))))))).....)))))..(((((.((((....(((((........)))))..)))))))))..((((((....)))))) ( -33.00) >DroYak_CAF1 67230 119 + 1 UCGUGACUCAAUUUCGUGGAAAAAAUUGUUGUUGCAUGGCAAUUGGCUUGCGAAUUUCGGUGCGCCUAUUGCCAAAUUAUUUCGUAUUUGUUUUGGGGCUCAUUAACAUGAAAAUGUUG (((..(..((((((((((.((.((....)).)).))))).)))))..)..))).....((((.((((.....(((((........))))).....)))).))))(((((....))))). ( -29.00) >consensus UCCUGACUCAAUUCCCUGGAAAAAAUUGCUGUUGCAUGGCAAUUUUCAUGCGAGUUUCGGGCCACCAAUUGCCAAAUUAUUUCGUAUUUGUUUUGGGGCUCAUUAACAUGAAAAUGUUG .............((((..((((((((((((.....))))))))))..((((((.....(((........))).......))))))....))..)))).....((((((....)))))) (-20.17 = -22.05 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:10 2006