Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,233,945 – 3,234,049 |
Length | 104 |
Max. P | 0.997669 |
Location | 3,233,945 – 3,234,049 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 84.50 |
Mean single sequence MFE | -24.40 |
Consensus MFE | -17.98 |
Energy contribution | -17.78 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.17 |
Mean z-score | -3.70 |
Structure conservation index | 0.74 |
SVM decision value | 2.91 |
SVM RNA-class probability | 0.997669 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3233945 104 + 22407834 GCAGGUAACUCACACUGUUUUUUAACCCACUCCGGUAAAGUGCAUCAAUAAUUUCUCACUUUUAUUACUGCACUUAUCCGGAUCCGUUCGGGUUUCACCUGUCA (((((((((((.....(((....)))....(((((..(((((((..(((((..........)))))..)))))))..))))).......)))))..)))))).. ( -29.80) >DroSec_CAF1 68084 90 + 1 ACAGGUAACUUAUACUGUUUUU--------------AAAGUGCAUCAAUAAUUUCUCACUUUUAUUACUGCACUUAUCCGGAUCCGUUCGGGUUUCACCUGUCA ((((((................--------------.(((((((..(((((..........)))))..)))))))(((((((....)))))))...)))))).. ( -23.20) >DroSim_CAF1 69785 104 + 1 ACAGGUAACUCAUACUGUUUUUAAACCCACUCCGUUAAAGUGCAUCAAUAAUUUCUCACUUUUAUUACUGCACUUAUCCGGAUCCGUUCGUGUUUCACCUGUCA (((((((((.(..((.(((....)))....((((...(((((((..(((((..........)))))..)))))))...))))...))..).)))..)))))).. ( -22.00) >DroEre_CAF1 65031 103 + 1 CCGGGUAACUCACACAUUU-UGUAACCCUCUCCGCUAAAGUGCAUCAAUAAUUUCUCACUUUUAUUACUGCACUUAACCAGGUCCAUUCGGGUUUCACCUGUCA ..((((.((..........-.)).)))).........(((((((..(((((..........)))))..)))))))...(((((((.....))....)))))... ( -21.40) >DroYak_CAF1 63826 101 + 1 CCAGGUAACUCAAACAUUU---UAACCCACUCCGGUAAAGUGCGUCAAUAAUGUUUCACUUUUAUUACUGCACUUAUCCGGUUCCAUUGGGGUUUCACCUGUCA .(((((.............---.(((((...((((..(((((((..(((((..........)))))..)))))))..))))........)))))..)))))... ( -25.59) >consensus ACAGGUAACUCACACUGUUUUUUAACCCACUCCGGUAAAGUGCAUCAAUAAUUUCUCACUUUUAUUACUGCACUUAUCCGGAUCCGUUCGGGUUUCACCUGUCA .(((((...............................(((((((..(((((..........)))))..)))))))....((((((....)))))).)))))... (-17.98 = -17.78 + -0.20)
Location | 3,233,945 – 3,234,049 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 84.50 |
Mean single sequence MFE | -27.78 |
Consensus MFE | -19.78 |
Energy contribution | -20.86 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.04 |
Mean z-score | -2.88 |
Structure conservation index | 0.71 |
SVM decision value | 1.87 |
SVM RNA-class probability | 0.980737 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3233945 104 - 22407834 UGACAGGUGAAACCCGAACGGAUCCGGAUAAGUGCAGUAAUAAAAGUGAGAAAUUAUUGAUGCACUUUACCGGAGUGGGUUAAAAAACAGUGUGAGUUACCUGC ...(((((((((((((......(((((..(((((((.((((((..........)))))).)))))))..))))).))))))......(.....)..))))))). ( -33.50) >DroSec_CAF1 68084 90 - 1 UGACAGGUGAAACCCGAACGGAUCCGGAUAAGUGCAGUAAUAAAAGUGAGAAAUUAUUGAUGCACUUU--------------AAAAACAGUAUAAGUUACCUGU ..((((((((...(((........)))..(((((((.((((((..........)))))).))))))).--------------..............)))))))) ( -22.90) >DroSim_CAF1 69785 104 - 1 UGACAGGUGAAACACGAACGGAUCCGGAUAAGUGCAGUAAUAAAAGUGAGAAAUUAUUGAUGCACUUUAACGGAGUGGGUUUAAAAACAGUAUGAGUUACCUGU ..((((((((..((....(.(.((((...(((((((.((((((..........)))))).)))))))...)))).).)(((....)))....))..)))))))) ( -28.90) >DroEre_CAF1 65031 103 - 1 UGACAGGUGAAACCCGAAUGGACCUGGUUAAGUGCAGUAAUAAAAGUGAGAAAUUAUUGAUGCACUUUAGCGGAGAGGGUUACA-AAAUGUGUGAGUUACCCGG ...(((((....((.....)))))))((((((((((.((((((..........)))))).))))).)))))((.(..(.(((((-.....))))).)..))).. ( -24.50) >DroYak_CAF1 63826 101 - 1 UGACAGGUGAAACCCCAAUGGAACCGGAUAAGUGCAGUAAUAAAAGUGAAACAUUAUUGACGCACUUUACCGGAGUGGGUUA---AAAUGUUUGAGUUACCUGG ...(((((((...((((......((((..((((((..((((((..........))))))..))))))..))))..))))(((---(.....)))).))))))). ( -29.10) >consensus UGACAGGUGAAACCCGAACGGAUCCGGAUAAGUGCAGUAAUAAAAGUGAGAAAUUAUUGAUGCACUUUACCGGAGUGGGUUAAAAAACAGUAUGAGUUACCUGG ...(((((((...((....))..(((...(((((((.((((((..........)))))).)))))))...))).......................))))))). (-19.78 = -20.86 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:00 2006