Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,233,361 – 3,233,480 |
Length | 119 |
Max. P | 0.500000 |
Location | 3,233,361 – 3,233,480 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 83.11 |
Mean single sequence MFE | -28.48 |
Consensus MFE | -16.08 |
Energy contribution | -16.78 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.12 |
Mean z-score | -1.98 |
Structure conservation index | 0.56 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3233361 119 - 22407834 AAAAUGCUGGAGAAUUCUUAAAUCCGUGCAUGUUUCUAACAUCUUUUGCUGCUGCUCCUUGCAGCUACUUUUCGUGCUCGAAAAGAUGCACAUGCAAAUCUCGGAAAGUGUCAAAGAAA ....(((.(((...........)))((((((...................(((((.....)))))..(((((((....)))))))))))))..)))..(((..((.....))..))).. ( -30.80) >DroSec_CAF1 67496 119 - 1 AAAAUGCUGGAGAAUUCUUAAAUCCGCGCAUGUUUCUAACAUCUUUUGCCGCUGCUCCUUGCAGCUACUUUUCGUGCUCGAAAAAAUGCACAUGCAAAUCUCGGAAAGUGUCAAAGAAA ...((((((((...........)))).))))..........(((((.((.(((((.....))))).(((((((((((..........))))((....))...))))))))).))))).. ( -28.50) >DroSim_CAF1 69193 96 - 1 AAAAUGCUGGAGAAUUCUUAAAUCCGUGCAUGUUUCUAACAUCUUUUGCUGCUGCUCCUUGCAGCUA-----------------------CAUGCAAAUCUCGGAAAGUGUCAAAGAAA ...(((((.(((....)))...(((((((((((......((.....))..(((((.....))))).)-----------------------)))))).....)))).)))))........ ( -21.50) >DroEre_CAF1 64437 118 - 1 AAAGUGCUGAAGAAU-CUUAAAUCAGUGCAGGUUUCCAACAUCUUUCACUGCUGCUGCUUGCAGCUACUUUUCUUGCUAGAAAAAAUGCACAUGCAAAUCUCGCAGAGUGUCAAAGAAA ...(..((((.....-......))))..)............((((((((((((((.....)))))........((((.(((.....(((....)))..))).))))))))..))))).. ( -28.20) >DroYak_CAF1 63194 119 - 1 AAAGUGCUGAAGAAUUCUUAAAUCAGUGCAGAUUUCUAACAGCACUCACUGCUGCUCCUUGCUGCAAGUUUUCUUGUUAGAAAAAAUGCACAUGCAAAUCUCGGCAAGUGUCAAAGAAA ..(((((((.((((.(((...........))).))))..)))))))((((((((....((((((((..((((((....))))))..))))...))))....)))).))))......... ( -33.40) >consensus AAAAUGCUGGAGAAUUCUUAAAUCCGUGCAUGUUUCUAACAUCUUUUGCUGCUGCUCCUUGCAGCUACUUUUCGUGCUAGAAAAAAUGCACAUGCAAAUCUCGGAAAGUGUCAAAGAAA ...(..((.(((....))).......(((((((.................(((((.....)))))...((((((....)))))).....)))))))..........))..)........ (-16.08 = -16.78 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:59 2006