Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,233,102 – 3,233,218 |
Length | 116 |
Max. P | 0.922152 |
Location | 3,233,102 – 3,233,218 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 93.49 |
Mean single sequence MFE | -24.68 |
Consensus MFE | -19.70 |
Energy contribution | -20.22 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.10 |
Mean z-score | -2.02 |
Structure conservation index | 0.80 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922152 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3233102 116 - 22407834 AAGCUGCGACAGUUUUGGGUAAUCUGGCACUCGCUUAAUAUCAAACCGAAAAUUGUUAUGAAAAUGGCAGUUGCAAAAAGAUGGUUACAAAAAAUAGUGACCCAAAAUGGUAAAAA .(((((((((((((((.(((.....(((....))).........))).)))))))))((....)).))))))..........((((((........)))))).............. ( -26.94) >DroSec_CAF1 67207 114 - 1 AAGCUGGGACAGUUUUGGGUAAUCUAGCACUCGCUUAAUAUCAAACCGAA-CUUGUUAUGAAAAUGGCAGUUGCAAAAAGACGGUUACAAAAAAUAGUGACCCAAAAUGGAAAAA- ...........(((((((((...(((((....)).........(((((((-((.(((((....))))))))).(.....).)))))........)))..))))))))).......- ( -24.40) >DroSim_CAF1 68904 115 - 1 AAGCUGGGACAGUUUUGGGUAAUCUAGCACUCGCUUAAUAUCAAACCGAAAAUUGUUAUGAAAAUGGCAGUUGCAAAAAGACGGUUACAAAAAAUAGUGACCCAAAAUGGAAAAA- ...........(((((((((...(((((....)).........(((((..(((((((((....))))))))).........)))))........)))..))))))))).......- ( -25.90) >DroEre_CAF1 64154 112 - 1 AAGCUGGGACAGUUUUGGGUAAUCUAGCACUCGCUUAAUAUCAAACCGAAAAUUGUUAUGAAAAUGGCAGUUGCAAAAGGAGGGUUACAAAAAAUAGUGACCCAAAAUGGAA---- .(((((.(((((((((.(((.....(((....))).........))).)))))))))((....))..))))).........(((((((........))))))).........---- ( -27.84) >DroYak_CAF1 62902 113 - 1 AAGCUGGGACAGUUUCGGGUAAUCUAGAACUCGCUUAAUAUCAAACCGAAAAUUGUUAUGAAAAUAGCUGUUGCAAAAAGACGUUCACAAAAAAUAGUGACCCAAAAUGGAAA--- ....((((...((((.((((........))))((......((.....)).(((.(((((....))))).)))))....))))..((((........)))))))).........--- ( -18.30) >consensus AAGCUGGGACAGUUUUGGGUAAUCUAGCACUCGCUUAAUAUCAAACCGAAAAUUGUUAUGAAAAUGGCAGUUGCAAAAAGACGGUUACAAAAAAUAGUGACCCAAAAUGGAAAAA_ ((((((...))))))..((((....(((....)))...))))...(((..(((((((((....)))))))))..........((((((........)))))).....)))...... (-19.70 = -20.22 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:58 2006