Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,228,489 – 3,228,593 |
Length | 104 |
Max. P | 0.910248 |
Location | 3,228,489 – 3,228,593 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 93.79 |
Mean single sequence MFE | -27.84 |
Consensus MFE | -25.28 |
Energy contribution | -25.32 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.41 |
Structure conservation index | 0.91 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910248 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3228489 104 + 22407834 GAUG-UCUUUUUUCGCAGUGUAAGGGAGCUGCUUGUGUGCCUGGCGGUGCUGUUGAAUAUUGAACAAACAGCAAUGGUAAUUUGAAGAUUAUAAAUCGCAACAUA ....-.........(((((........))))).(((((.....(((((((((((............))))))....((((((....))))))..))))).))))) ( -24.00) >DroSec_CAF1 62539 99 + 1 ------UUUUUGUGGCAGUGUAAGGGAGCUGCUUGUGUGCCUGGCGGUGCUGUUGAAUAUUGAACAAACAGCACUGGUAAUUUGAAGAUUAUAAAUCGCAACAUA ------.......((((((........))))))(((((((....((((((((((............))))))))))((((((....)))))).....)).))))) ( -28.10) >DroSim_CAF1 61051 105 + 1 GAUGCUAUUUUGUCGCAGUGUAAGGGAGCUGCUUGUGUGCCUGGCGGUGCUGUUGAAUAUUGAACAAACAGCACUGGUAAUUUGAAGAUUAUAAAUCGCAACAUA ..(((.((((.((((((((........))))).........((.((((((((((............)))))))))).)).......)))...)))).)))..... ( -28.70) >DroEre_CAF1 59021 104 + 1 GAUGC-CUUUUUUGGCAGUGUAAGGGAGUUGCUCGUGUGCCUGGCGGUGCUGUUGAAUAUUGAACAAACAGCACUGGUAAUUUGAAGAUUAUAAAUCGCAACAUA ..(((-(......))))..........((((((((..((((....(((((((((............)))))))))))))...))).(((.....))))))))... ( -30.30) >DroYak_CAF1 57956 103 + 1 GAUGC--UUUUGUGGCAGUGUAAGGAAGCUGCUUGUGUGCCUGGCGGUGCUGUUGAAUAUUGAACAAACAGCACUGGUAAUUUGAAGAUUAUAAAUCGCAACAUA .....--......((((((........))))))(((((((....((((((((((............))))))))))((((((....)))))).....)).))))) ( -28.10) >consensus GAUGC_CUUUUGUGGCAGUGUAAGGGAGCUGCUUGUGUGCCUGGCGGUGCUGUUGAAUAUUGAACAAACAGCACUGGUAAUUUGAAGAUUAUAAAUCGCAACAUA ..............(((((........)))))..((((((....((((((((((............))))))))))((((((....)))))).....)).)))). (-25.28 = -25.32 + 0.04)
Location | 3,228,489 – 3,228,593 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 93.79 |
Mean single sequence MFE | -18.60 |
Consensus MFE | -15.90 |
Energy contribution | -16.14 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.21 |
Structure conservation index | 0.85 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.505783 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3228489 104 - 22407834 UAUGUUGCGAUUUAUAAUCUUCAAAUUACCAUUGCUGUUUGUUCAAUAUUCAACAGCACCGCCAGGCACACAAGCAGCUCCCUUACACUGCGAAAAAAGA-CAUC ..(((((((((.....))).............(((((((.(........).))))))).......))).))).((((..........)))).........-.... ( -15.20) >DroSec_CAF1 62539 99 - 1 UAUGUUGCGAUUUAUAAUCUUCAAAUUACCAGUGCUGUUUGUUCAAUAUUCAACAGCACCGCCAGGCACACAAGCAGCUCCCUUACACUGCCACAAAAA------ ..(((((((((.....)))............((((((((.(........).))))))))......))).))).((((..........))))........------ ( -17.30) >DroSim_CAF1 61051 105 - 1 UAUGUUGCGAUUUAUAAUCUUCAAAUUACCAGUGCUGUUUGUUCAAUAUUCAACAGCACCGCCAGGCACACAAGCAGCUCCCUUACACUGCGACAAAAUAGCAUC ..(((((((......................((((((((.(........).)))))))).((...((......)).))..........))))))).......... ( -20.80) >DroEre_CAF1 59021 104 - 1 UAUGUUGCGAUUUAUAAUCUUCAAAUUACCAGUGCUGUUUGUUCAAUAUUCAACAGCACCGCCAGGCACACGAGCAACUCCCUUACACUGCCAAAAAAG-GCAUC ...((((((((.....)))............((((((((.(........).))))))))..............)))))..........((((......)-))).. ( -21.70) >DroYak_CAF1 57956 103 - 1 UAUGUUGCGAUUUAUAAUCUUCAAAUUACCAGUGCUGUUUGUUCAAUAUUCAACAGCACCGCCAGGCACACAAGCAGCUUCCUUACACUGCCACAAAA--GCAUC .((((((((.....((((......))))...((((((((.(........).)))))))))))..((((...(((.......)))....)))).....)--)))). ( -18.00) >consensus UAUGUUGCGAUUUAUAAUCUUCAAAUUACCAGUGCUGUUUGUUCAAUAUUCAACAGCACCGCCAGGCACACAAGCAGCUCCCUUACACUGCCACAAAAG_GCAUC ..(((((((((.....)))............((((((((.(........).))))))))......))).))).((((..........)))).............. (-15.90 = -16.14 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:51 2006