Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,228,188 – 3,228,300 |
Length | 112 |
Max. P | 0.865631 |
Location | 3,228,188 – 3,228,300 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 99.64 |
Mean single sequence MFE | -32.50 |
Consensus MFE | -32.02 |
Energy contribution | -32.22 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.49 |
Structure conservation index | 0.99 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.865631 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3228188 112 - 22407834 UUAAAGACCAUCAAAAUGAAGAUGAGAGUGGCGGCGCCGAAUCGCGGGACGUGGCAACUUAAAAUGCCGGCAACGUAAGUAAAGUCGGGCAUAUCUCAUGACCGCCAACCAC ........((((........)))).(..(((((((((((..((....))..))))........((((((((.((....))...))).))))).......).))))))..).. ( -33.00) >DroSec_CAF1 62235 112 - 1 UUAAAGACCAUCAAAAUGAAGAUGAGAGUGGCGGCGCCGAAUCGCGGGACGUGGCAACUUAAAAUGCCGGCAACGUAAGUAAAGUCGGGCAUAUCUCAUGACCGCCAACCAC ........((((........)))).(..(((((((((((..((....))..))))........((((((((.((....))...))).))))).......).))))))..).. ( -33.00) >DroSim_CAF1 60746 112 - 1 UUAAAGACCAUCAAAAUGAAGAUGAGAGUGGCGGCGCCGAAUCGCGGGACGUGGCAACUUAAAAUGCCGGCAACGUAAGUAAAGUCGGGCAUAUCUCAUGACCGCCAACCAC ........((((........)))).(..(((((((((((..((....))..))))........((((((((.((....))...))).))))).......).))))))..).. ( -33.00) >DroEre_CAF1 58715 112 - 1 UUAAAGACCAUCAAAAUGAAGAUGAGAGUGGCGGCGCCGAAUCGCGGGACGUGGCAACUUAAAAUGCCGGCAACGUAAGUAAAGUCGGGCAUAUCUCAUGACCGCCAACCAC ........((((........)))).(..(((((((((((..((....))..))))........((((((((.((....))...))).))))).......).))))))..).. ( -33.00) >DroYak_CAF1 57644 112 - 1 UUAAAGACCAUCAAAAUGAAGAUGAGAGUGGCGGCGCCGAAUCGCGGGACGUGGCAACUUAAAAUGCCAGCAACGUAAGUAAAGUCGGGCAUAUCUCAUGACCGCCAACCAC ........((((........)))).(..(((((((((((..((....))..))))........(((((.((.((....))...))..))))).......).))))))..).. ( -30.50) >consensus UUAAAGACCAUCAAAAUGAAGAUGAGAGUGGCGGCGCCGAAUCGCGGGACGUGGCAACUUAAAAUGCCGGCAACGUAAGUAAAGUCGGGCAUAUCUCAUGACCGCCAACCAC ........((((........)))).(..(((((((((((..((....))..))))........((((((((.((....))...))).))))).......).))))))..).. (-32.02 = -32.22 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:49 2006