Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,226,175 – 3,226,274 |
Length | 99 |
Max. P | 0.661848 |
Location | 3,226,175 – 3,226,274 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 94.47 |
Mean single sequence MFE | -22.06 |
Consensus MFE | -18.72 |
Energy contribution | -19.32 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.36 |
Structure conservation index | 0.85 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661848 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3226175 99 - 22407834 GGCUUGUAAAUCAGGCGAAAGCCAUUAAAGCAUUAUUCAGGCGCCAUUUUUGGUCAAACAAGCAAUUAUGUGCCUU-GACUACAUAAAUAGUUGUGAUUU .((((((......(((....)))...................((((....))))...))))))..(((((((....-...)))))))............. ( -23.30) >DroSec_CAF1 60243 99 - 1 GGCUUGUAAAUCAGGCGAAAGCCAUUAAAGCAUUAUUCAGGCGCAAUUUUUGGUCAAACAAGCAAUUAUGUGCCGU-CACUACAUAAACAGUUGUGAUUU .((((...(((..(((....)))))).))))........(((((((((((((......)))).)))..))))))((-(((.((.......)).))))).. ( -25.70) >DroSim_CAF1 58742 99 - 1 GGCUUGUAAAUCAGGCGAAAGCCAUUAAAGCAUUAUUCACGCGCAAUUUUUGGUCAAACAAGCAAUUAUGUGCCGU-CACUACAUAAAUAGUUGUGAUUU .((((((..(((((((....)))......((.........))........))))...))))))...........((-(((.((.......)).))))).. ( -22.90) >DroEre_CAF1 56772 99 - 1 GCGUUGUAAAUCAGGCGAAAGCCAUUAAAGCAUUAUUCAAGCACAAUUUUUGGUCAAACAAGCAAUUAUGUGCCGU-CACUACAUAAAAAGUUGUGAUUU ((..((.....))(((....)))......)).........((((((((((((......)))).)))..))))).((-(((.((.......)).))))).. ( -20.90) >DroYak_CAF1 55621 100 - 1 GGGUUGUAAAUCAGGCGAAAGCCAUUAAAGCAUUAUUCAAGCAAAAUUUUUGGUCAAACAAGCAAUUAUGUGCCGUGUACUACAUAAAAAGUUGUGAUUU .(.((((..(((((((....)))......((.........))........))))...)))).)..(((((((........)))))))............. ( -17.50) >consensus GGCUUGUAAAUCAGGCGAAAGCCAUUAAAGCAUUAUUCAAGCGCAAUUUUUGGUCAAACAAGCAAUUAUGUGCCGU_CACUACAUAAAAAGUUGUGAUUU .((((((..(((((((....)))......((.........))........))))...))))))..(((((((........)))))))............. (-18.72 = -19.32 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:48 2006