Locus 1187

Sequence ID 2L_DroMel_CAF1
Location 3,226,005 – 3,226,120
Length 115
Max. P 0.657883
window1924

overview

Window 4

Location 3,226,005 – 3,226,120
Length 115
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 85.54
Mean single sequence MFE -29.72
Consensus MFE -18.76
Energy contribution -19.12
Covariance contribution 0.36
Combinations/Pair 1.20
Mean z-score -2.23
Structure conservation index 0.63
SVM decision value 0.26
SVM RNA-class probability 0.657883
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3226005 115 + 22407834
AUUAA-AAAAGUGACUGCCAGCUGUUACAUCUUUUAUGAUACGAAUAUGCAGGC---GGCUGGCGGUGAAGUAGAGUGAUUUUAAUCAGAACAUCUCCAGGGAGUGUGUAAUUAAAAUU
.....-.....(.(((((((((((((.(((.(((........))).)))..)))---)))))))))).)........(((((((((....(((.(((....))))))...))))))))) ( -32.30)
>DroSec_CAF1 60073 115 + 1
AUUAA-AAAAGUGACUGCCAGCUGUUACAUUUUUUAUGAUACGAGUAUGCUGGC---GGCUGGCGGUGAAGUAGAGUGAUUUUAAUCAGAACAUCUCCAGGGAGUGUGUAAUUAAAAUU
.....-.....(.(((((((((((((((((.(((........))).))).))))---)))))))))).)........(((((((((....(((.(((....))))))...))))))))) ( -34.30)
>DroSim_CAF1 58571 115 + 1
AUUAA-AAAAGUGACUGCCAGCUGUUACAUUUUUUAUGAUACAAGUAUGCAGGC---GGCUGGCGGUGAAGUAGAGUGAUUUUAAUCAGAACAUCUCCGGGGAGUGUGUAAUUAAAAUU
.....-.....(.(((((((((((((.(((.....)))(((....)))...)))---)))))))))).)........(((((((((....(((.(((....))))))...))))))))) ( -31.80)
>DroEre_CAF1 56616 101 + 1
AUUAAAAAAAGUGACUGCCAGCUGUUACAUUUUUUAUGAUACG------------------CGUUGUGGAGUAGAGUGAUUUUAAUCAGAACAUCUCCUGGGAGUGUGUAAUUAAAAUU
..(((((((.(((((........))))).)))))))..(((((------------------(.....((((.....((((....))))......)))).....)))))).......... ( -21.50)
>DroYak_CAF1 55447 119 + 1
UUAAAAAAAAGUGACUGCCAGCUGUUACAUUUUUUAUGAUACUACUACUCGUAUGUAUGGUGGUAGUGAAGUAGAGUGAUUUUAAUCAAAAUAUCUCCUGGGGGUGUGUAAUUAAAAUU
..........(((((........)))))...((((((..(((((((((.(((....))))))))))))..)))))).(((((((((....((((((.....))))))...))))))))) ( -28.70)
>consensus
AUUAA_AAAAGUGACUGCCAGCUGUUACAUUUUUUAUGAUACGAGUAUGCAGGC___GGCUGGCGGUGAAGUAGAGUGAUUUUAAUCAGAACAUCUCCAGGGAGUGUGUAAUUAAAAUU
...........(.(((((((((....................................))))))))).)........(((((((((....(((.(((....))))))...))))))))) (-18.76 = -19.12 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:47 2006