Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,225,727 – 3,225,819 |
Length | 92 |
Max. P | 0.601424 |
Location | 3,225,727 – 3,225,819 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 71.42 |
Mean single sequence MFE | -21.84 |
Consensus MFE | -8.34 |
Energy contribution | -7.26 |
Covariance contribution | -1.08 |
Combinations/Pair | 1.57 |
Mean z-score | -1.74 |
Structure conservation index | 0.38 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.601424 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3225727 92 + 22407834 AAAGAUGUGAGCUGGAUGUUAAUUAAAAUCACAAGAUCUAAUGUAU------------UGAAAGUUGGAGCAAAUUUCGUUUUGAAUGUG-C------------ACCAAUUUACAAA ..((((((((....(((....)))....)))))...)))......(------------((.(((((((.(((...(((.....)))..))-)------------.))))))).))). ( -20.00) >DroSec_CAF1 59788 92 + 1 AAAGAUGUGAGCUGGAUGUUAAUCAAAAUCACAAGAUCUAAUCUAU------------UGAAAGGUGAAGCAAAAUUCGUUUCAAAUAUG-C------------ACCACUUUACAAA ..((((((((....(((....)))....)))))...)))......(------------((.((((((..(((................))-)------------..)))))).))). ( -16.19) >DroSim_CAF1 58286 92 + 1 AAAGAUGUGAGCUGGAUGUUAAUUAAAAUCACAAGAUCUAAUCUAU------------CGAAAGGUGAAGCAAAAUUCGUUUCAAAUAUG-C------------ACUAAUUUACAAA .....((((((.(((.(((.........................((------------(....)))(((((.......)))))......)-)------------)))).)))))).. ( -14.00) >DroEre_CAF1 56326 117 + 1 AAAGAUGUGAGCAGGGUUUUAAUUAAGACCAUAAGAUCUAAUCCAUCACACUUGUCGUUGAAAGACGAGGCAGAUAUGGUUUUGAAUGUGGCACUACACAGCUUACCAAUCUAUGCA ..((((((((((..........(((((((((((.(((.......)))...((((((.......)))))).....))))))))))).((((......))))))))))..))))..... ( -32.90) >DroYak_CAF1 55136 117 + 1 AAAGAUGUGAGCUGGGUUUUAAUUAGAAUCAUAAGACCUUAUCUAUCACACUUGCCGUUGCAAGGCGAAGCAAAUAUGGUUUUAAAUGUUGCACUAUAAAGUUUACCCAUCUACACA .....((((((.(((((.....((((((((((((((.....))).((.(.(((((....)))))).))......))))))))))).......(((....)))..))))).)).)))) ( -26.10) >consensus AAAGAUGUGAGCUGGAUGUUAAUUAAAAUCACAAGAUCUAAUCUAU____________UGAAAGGUGAAGCAAAUUUCGUUUUAAAUGUG_C____________ACCAAUUUACAAA .....(((((....(((....)))....)))))................................((((((.......))))))................................. ( -8.34 = -7.26 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:46 2006