| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,224,877 – 3,224,990 |
| Length | 113 |
| Max. P | 0.973746 |
| Location | 3,224,877 – 3,224,990 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 92.95 |
| Mean single sequence MFE | -25.40 |
| Consensus MFE | -21.96 |
| Energy contribution | -22.16 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.973746 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3224877 113 - 22407834 GACAACAGACAAUUCUGCAUCCACUCAACUAAAGGCAGCGGAAAUGCAGAUUAUUAUCGAGCAUAAGCAGGAAAAUACUUUUCUUUGUUUUCCACGAAACAGUGU-UGCCCCAA ..(((((......(((((((((.(((........).)).)))..))))))......(((.((....)).((((((((........)))))))).))).....)))-))...... ( -26.20) >DroSec_CAF1 58925 113 - 1 GACAACAGACAAUUCUGCAUCCACUCAGCUGAAGGCAGCGGAAAUGCAGAUUAUUAUCGAGCAUAAGCAGGAAAAUACUUCUCUUUGUUUUCCACGAAACAAUCC-UUUCCCAA .............(((((((....((.((((....)))).)).)))))))......(((.((....)).((((((((........)))))))).)))........-........ ( -25.00) >DroSim_CAF1 57416 113 - 1 GACAACAGACAAUUCUGCAUCCACUAAACUGAAGGCAGCGGAAAUGCAGAUUAUUAUCGAGCAUAAGCAGGAAAAUACUUCUCUUUGUUUUCCACGAAACAGUCU-UUCCCCAA ......((((...(((((((((.((...(....)..)).)))..))))))......(((.((....)).((((((((........)))))))).)))....))))-........ ( -25.80) >DroEre_CAF1 55532 114 - 1 GACAACAGACAAUUCUGUAUCCACUCAACUGAAGGCAGCGGAAAUGCAGAUUAUUAUCGAGCAUAAGCAGGAAAAUAUUUCUCUUUGUUUUCCACGAAACAGUCUUUCUCCACA ......((((...(((((((....((..(((....)))..)).)))))))......(((.((....)).((((((((........)))))))).)))....))))......... ( -25.50) >DroYak_CAF1 54254 113 - 1 GACAACAGACAAUUCUGUAUCCACUCAACUGAAGGCAGCGGAAAUGCAGAUUAUUAUCGAGCAUAAGCAGGGAAAUCUUUCGCUUUGUUUUCCACGAAACAGUCU-UCUCCAAA ....(((((....)))))............(((((((((((((((((.(((....)))..)))).....((....))))))))).((((((....))))))))))-))...... ( -24.50) >consensus GACAACAGACAAUUCUGCAUCCACUCAACUGAAGGCAGCGGAAAUGCAGAUUAUUAUCGAGCAUAAGCAGGAAAAUACUUCUCUUUGUUUUCCACGAAACAGUCU_UCUCCCAA .......(((...(((((((((.((...(....)..)).)))..))))))......(((.((....)).((((((((........)))))))).)))....))).......... (-21.96 = -22.16 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:45 2006