Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,224,513 – 3,224,609 |
Length | 96 |
Max. P | 0.899227 |
Location | 3,224,513 – 3,224,609 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.88 |
Mean single sequence MFE | -26.33 |
Consensus MFE | -13.19 |
Energy contribution | -14.13 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.12 |
Mean z-score | -2.36 |
Structure conservation index | 0.50 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.899227 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3224513 96 - 22407834 --------AC-UGG-AAAACUUUUUCCAGCCUCGUCACAGUUCCGAAAGAUUUCGAGUGUGACGAA-------------GCGAUCGCCAUCGAUUAAAUUAAGGGAA-CAAAAAGGUCAG --------.(-(((-....((((((((.((.((((((((.(..((((....))))).)))))))).-------------))(((((....)))))........))).-..))))).)))) ( -27.90) >DroPse_CAF1 73025 112 - 1 UACGAUAUAAUUUC-AAAACUUUGU---GACCAGUCACAGUUAGCCUGGUUUUAAACUGCCAUGGAACCCAAAGAGCUUGCGAUCUGCAUUGAUUAAAUUUAA---A-GAAAAAAGUCAC ...(((....((((-.......(((---((....)))))((.((((((((((((........)))))))...)).))).))((((......))))........---.-))))...))).. ( -19.90) >DroSec_CAF1 58561 96 - 1 --------AC-UGG-AAAACUUUUUCCAGCCUCGUCACACUUCCGAAAGAUUUCGAGUGUGACGAA-------------GCGAUCGCCAUCGAUUAAAUUAAGGGAA-CAAAAAGGUCAG --------.(-(((-....((((((((.((.((((((((((..((((....)))))))))))))).-------------))(((((....)))))........))).-..))))).)))) ( -31.80) >DroSim_CAF1 57058 96 - 1 --------AC-UGG-AAAACUUUUUCCAGCCUCGUCACACUUCCGAAAGAUUUCGAGUGUGACGAA-------------GCGAUCGCCAUCGAUUAAAUUAAGGGAA-CAAAAAGGUCAG --------.(-(((-....((((((((.((.((((((((((..((((....)))))))))))))).-------------))(((((....)))))........))).-..))))).)))) ( -31.80) >DroEre_CAF1 55171 95 - 1 --------AC-CAG-AAAACUUUUUCCAGCCUCGUCACAGUUCAGAAGGAUUUCGAGUGUGACGAA-------------GCGAUCG-CAUCGAUUAAAUGAAAGCAA-CAAAAAGGUCAG --------..-..(-(...((((((...((.((((((((.(((.(((....)))))))))))))).-------------))(((((-...)))))............-.)))))).)).. ( -22.80) >DroYak_CAF1 53888 98 - 1 --------AC-UGCAAAAACUUUUUUCAGCCUCGUCACAGUUCAGAAAGAUUUCGAGUGUGACGAA-------------GCGAUCGCCAUCGAUUAAAUUAAAGGAACCAAAAAGGUCAG --------.(-((.....((((((((..((.((((((((.(((.(((....)))))))))))))).-------------))(((((....)))))..............))))))))))) ( -23.80) >consensus ________AC_UGG_AAAACUUUUUCCAGCCUCGUCACAGUUCCGAAAGAUUUCGAGUGUGACGAA_____________GCGAUCGCCAUCGAUUAAAUUAAAGGAA_CAAAAAGGUCAG ..................(((((((......((((((((.(((.(((....))))))))))))))................((((......))))...............)))))))... (-13.19 = -14.13 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:44 2006