Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,224,132 – 3,224,225 |
Length | 93 |
Max. P | 0.987473 |
Location | 3,224,132 – 3,224,225 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 69.88 |
Mean single sequence MFE | -31.84 |
Consensus MFE | -15.36 |
Energy contribution | -15.25 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.32 |
Mean z-score | -1.86 |
Structure conservation index | 0.48 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.902897 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3224132 93 + 22407834 CCUGGGUGGCUGGGUG--UUGGACCCUCGGUUAUUAUGCUGAUUGUGUUGACACACUCGCCAUCCCAAGUAUGUCCACAUAU--ACC----------------GAUAUAG-------UAU ..((((((((.(((((--(..(((..(((((......)))))..)).)..)))).)).)))).)))).(((((....)))))--...----------------.......-------... ( -30.60) >DroSec_CAF1 58173 99 + 1 CCUGGGUGGCUGGGUG--UUGGACCCUCGGUUAUUAUGCUGAUUGUGUUGACACACUCGCCAUCCCAAGUAUGCCCACAUAU--AGC-------------AUGGCUAUGGGU----AUAU ..((((((((.(((((--(..(((..(((((......)))))..)).)..)))).)).)))).)))).(((((((((....(--(((-------------...)))))))))----)))) ( -40.20) >DroSim_CAF1 56677 92 + 1 CCUGGGUGGCUGGGUG--UUGGACCCUCGGUUAUUAUGCUGAUUGUGUUGACACACUCGCCAUUCCAAGUAUGUCCAC----------------------AUGGCUAUGGGU----AUAU ..((((((((.(((((--(..(((..(((((......)))))..)).)..)))).)).)))).)))).((((..(((.----------------------.......)))..----)))) ( -31.00) >DroEre_CAF1 54765 117 + 1 CCAGGGUGGCUGGGUG--UUGGACCCUCAGUUAUUAUGCUGAUUGUGUUGACACACUCGCCCUCCCAAGUUUGUCCAGAUAUACAGCCAGCAUAUAUAGCAUAG-UAUAGGUACAUGUAU ....(.((((((..((--((((((..(((((......))))).((((....)))).................))))).)))..)))))).).......((((.(-((....))))))).. ( -32.50) >DroYak_CAF1 53515 104 + 1 CCUGGGCGGCUGGGUG--UUGGACCCUCAGUUAUUAUGCUGAUUGUGUUGACACACUCGGCCACCCAACUUUGCCCACAAAU--AGCC-------AUAGUAUAG-UAU----ACUUGUAU ..((((.(((((((((--((.((((.(((((......)))))..).))).).)))))))))).))))(((.(((........--....-------...))).))-)..----........ ( -32.66) >DroPer_CAF1 68205 94 + 1 CUUGGAGGUCACGGCCAUAUGUACUCUAGGUUAUUAUGCUGAUUGUGUUGACACACUGUGCGUCUGUUGUUUGUACUU----------------------UCGGUGCUGACC----UUAG ....(((((((((((...((((((.....((((..((((.....)))))))).....))))))..)))))..((((..----------------------...)))).))))----)).. ( -24.10) >consensus CCUGGGUGGCUGGGUG__UUGGACCCUCGGUUAUUAUGCUGAUUGUGUUGACACACUCGCCAUCCCAAGUAUGUCCACAUAU__AGC_____________AUGG_UAUGGGU____AUAU ...(((.(((.(((((....(.((..(((((......)))))..)).).....)))))))).)))....................................................... (-15.36 = -15.25 + -0.11)
Location | 3,224,132 – 3,224,225 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 69.88 |
Mean single sequence MFE | -29.42 |
Consensus MFE | -13.96 |
Energy contribution | -14.35 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.25 |
Mean z-score | -2.30 |
Structure conservation index | 0.47 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987473 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3224132 93 - 22407834 AUA-------CUAUAUC----------------GGU--AUAUGUGGACAUACUUGGGAUGGCGAGUGUGUCAACACAAUCAGCAUAAUAACCGAGGGUCCAA--CACCCAGCCACCCAGG ...-------((((((.----------------...--..)))))).....((((((.((((((.((((....)))).))..............((((....--.)))).)))))))))) ( -29.80) >DroSec_CAF1 58173 99 - 1 AUAU----ACCCAUAGCCAU-------------GCU--AUAUGUGGGCAUACUUGGGAUGGCGAGUGUGUCAACACAAUCAGCAUAAUAACCGAGGGUCCAA--CACCCAGCCACCCAGG .(((----.((((((.....-------------...--...)))))).)))((((((.((((((.((((....)))).))..............((((....--.)))).)))))))))) ( -34.20) >DroSim_CAF1 56677 92 - 1 AUAU----ACCCAUAGCCAU----------------------GUGGACAUACUUGGAAUGGCGAGUGUGUCAACACAAUCAGCAUAAUAACCGAGGGUCCAA--CACCCAGCCACCCAGG ....----..(((((....)----------------------)))).....(((((..((((((.((((....)))).))..............((((....--.)))).)))).))))) ( -26.90) >DroEre_CAF1 54765 117 - 1 AUACAUGUACCUAUA-CUAUGCUAUAUAUGCUGGCUGUAUAUCUGGACAAACUUGGGAGGGCGAGUGUGUCAACACAAUCAGCAUAAUAACUGAGGGUCCAA--CACCCAGCCACCCUGG .....(((.((((((-(...((((.......)))).)))))...)))))...(..((..(((..((((....))))..((((........))))((((....--.)))).)))..))..) ( -31.70) >DroYak_CAF1 53515 104 - 1 AUACAAGU----AUA-CUAUACUAU-------GGCU--AUUUGUGGGCAAAGUUGGGUGGCCGAGUGUGUCAACACAAUCAGCAUAAUAACUGAGGGUCCAA--CACCCAGCCGCCCAGG ..((((((----(..-(........-------)..)--))))))((((...(((((((((((..((((....))))..((((........)))).)))....--)))))))).))))... ( -35.30) >DroPer_CAF1 68205 94 - 1 CUAA----GGUCAGCACCGA----------------------AAGUACAAACAACAGACGCACAGUGUGUCAACACAAUCAGCAUAAUAACCUAGAGUACAUAUGGCCGUGACCUCCAAG ...(----(((((...(((.----------------------..((((........(((((.....))))).......((((.........)).))))))...)))...))))))..... ( -18.60) >consensus AUAC____ACCCAUA_CCAU_____________GCU__AUAUGUGGACAAACUUGGGAUGGCGAGUGUGUCAACACAAUCAGCAUAAUAACCGAGGGUCCAA__CACCCAGCCACCCAGG ...........................................(((((...(((((....((...((((....))))....)).......))))).)))))................... (-13.96 = -14.35 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:43 2006