Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,223,750 – 3,223,939 |
Length | 189 |
Max. P | 0.699518 |
Location | 3,223,750 – 3,223,870 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.82 |
Mean single sequence MFE | -26.38 |
Consensus MFE | -21.06 |
Energy contribution | -21.06 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.12 |
Mean z-score | -1.53 |
Structure conservation index | 0.80 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551980 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3223750 120 + 22407834 UUUCGGUCCUUUGGCAAGAUUAAGAUUUAAAUAAUUUAUUUGAAGUACAUUUAAUUUGCUGGCAACACACAAAGAUAUCCCAGGCCAUUUCCCUGGCCCUCAUUUAUGGGCACAAUAAGU ....((..((((((((.(((((((.((((((((...)))))))).....))))))))))((....))..)))))....))((((.......))))((((........))))......... ( -25.30) >DroSec_CAF1 57794 120 + 1 UUUCGGUCCUUUGGCAAGAUUAAGAUUUAAAUAAUUUAUUUGAAGUACAUUUAAUUUGCUGGCAACACACAAAGAUAUCCCAGGCCAUUUCCCUGGCCCCCAUUUAUGGGCACAAUAAGU ....((..((((((((.(((((((.((((((((...)))))))).....))))))))))((....))..)))))....))..(((((......)))))((((....)))).......... ( -25.40) >DroSim_CAF1 56297 119 + 1 UUUCGGUCCUUUGCCAAGAUUAAGAUUUAAAUAAUUUAUUUGAAGUACAUUUAAUUUGCUGGCAACACACAAAGAUAUCCCAGGCCAU-UCCCUGGCCCCCAUUUAUGGGCACAAUAAGU .....((((.((((((((((((((.((((((((...)))))))).....))))))))..)))))).................(((((.-....))))).........))))......... ( -25.20) >DroEre_CAF1 54393 117 + 1 UU--GGCCCGUUGGCAAGAUUAAGAUUUAAAUAAUUUAGUUGAAGUACAUUUAAUUUGCUGGCAACACACAAAGAUAUUCCAGGUCAUUUCCC-GGCCCCCAUUUAUGGGCACAAUAAGU ((--(((((((..((((.....(((((.....))))).((((((.....))))))))))..))...................((((.......-)))).........)))).)))..... ( -24.40) >DroYak_CAF1 53133 118 + 1 UU--GGCCCGUUGGCAAGAUUAAGAUUUAAAUAAUUUAUUUGAAGUACAUUUAAUUUGCUGGCAACACACAAUGAUAUCCCAGGCUAUUUCCCUGGCCCUCAUUUAUGGGCACAAUAAGU ((--(((((((..(((.(((((((.((((((((...)))))))).....))))))))))..)).......(((((....(((((.......)))))...)))))...)))).)))..... ( -31.60) >consensus UUUCGGUCCUUUGGCAAGAUUAAGAUUUAAAUAAUUUAUUUGAAGUACAUUUAAUUUGCUGGCAACACACAAAGAUAUCCCAGGCCAUUUCCCUGGCCCCCAUUUAUGGGCACAAUAAGU .....(((((((((((.(((((((.((((((((...)))))))).....))))))))))((....))..)))).........(((((......))))).........))))......... (-21.06 = -21.06 + 0.00)
Location | 3,223,830 – 3,223,939 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 94.73 |
Mean single sequence MFE | -39.76 |
Consensus MFE | -31.62 |
Energy contribution | -31.70 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.07 |
Mean z-score | -1.70 |
Structure conservation index | 0.80 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.699518 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3223830 109 - 22407834 AUGCUAGC--AAUCUCGGGUUACCAGGUUUAAGUGCACAUUUC-GGCCCGAAUGGGUCAACCUUUUGGCCCGACUUAUUGUGCCCAUAAAUGAGGGCCAGGGAAAUGGCCUG (((...((--(((.((((((((..(((((.((((....)))).-(((((....))))))))))..))))))))...)))))...)))......((((((......)))))). ( -37.80) >DroSec_CAF1 57874 109 - 1 AUGCUAGC--AAUCUCGGGUUACCAGGUUUAAGUGCGCAUUUC-GGCCCGAAUGGGUCAGCCUUUUGGCCCGACUUAUUGUGCCCAUAAAUGGGGGCCAGGGAAAUGGCCUG ......((--(((.((((((((..(((((...(....).....-(((((....))))))))))..))))))))...))))).((((....))))(((((......))))).. ( -40.20) >DroSim_CAF1 56377 110 - 1 AUGCUAGCACAAUCUCGGGUUACCAGGUUUAAGUGCGCAUUUC-GGCCCGAAUGGGUCAGCCUUUUGGCCCGACUUAUUGUGCCCAUAAAUGGGGGCCAGGGA-AUGGCCUG ......(((((((.((((((((..(((((...(....).....-(((((....))))))))))..))))))))...)))))))(((....)))((((((....-.)))))). ( -44.00) >DroEre_CAF1 54471 107 - 1 AUCCUAGC--AAUCUCGGGUUACC-GGUUUAAGUGCGCAUUUC-GGCCCGAAUGGGUCAGCCUUUUGGCCCGACUUAUUGUGCCCAUAAAUGGGGGCC-GGGAAAUGACCUG .(((..((--(...((((....))-))......)))......(-(((((.((((((((.(((....)))..))))))))....(((....))))))))-))))......... ( -38.20) >DroYak_CAF1 53211 109 - 1 AUCCUAGC--AAUCUCGGGUUACC-GGUUUAAGUGCGCAUUUUGGGCCCGAAUGGGUCAGCCUUUUGGCCCGACUUAUUGUGCCCAUAAAUGAGGGCCAGGGAAAUAGCCUG .((((.((--(...((((....))-))......))).((((((((((.(.((((((((.(((....)))..))))))))).))))).))))))))).((((.......)))) ( -38.60) >consensus AUGCUAGC__AAUCUCGGGUUACCAGGUUUAAGUGCGCAUUUC_GGCCCGAAUGGGUCAGCCUUUUGGCCCGACUUAUUGUGCCCAUAAAUGGGGGCCAGGGAAAUGGCCUG ..............(((((((.....((........))......)))))))..((((((.(((..((((((..(...((((....))))..).)))))))))...)))))). (-31.62 = -31.70 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:41 2006