| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,218,907 – 3,219,006 |
| Length | 99 |
| Max. P | 0.734859 |
| Location | 3,218,907 – 3,219,006 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 82.14 |
| Mean single sequence MFE | -33.43 |
| Consensus MFE | -21.86 |
| Energy contribution | -21.70 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.734859 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3218907 99 - 22407834 CCCC-GAAUCAGUGCUUAAUUGGAAGCACUUUUAACGCUCGACUUGACUGGCAAACAGAGGGCGACCCACAAAAGGUUGCCACCGGUGACCUUUGCCCCC-------------- ....-.....(((((((......)))))))...................((((((..(..(((((((.......)))))))..)(....).))))))...-------------- ( -28.60) >DroSec_CAF1 52998 99 - 1 C-CC-GAAUCAGUGCUUAAUUGGAAGCACUUUUAACGCUCGACUUGACUGGCAAACAGAGGGCGACCCACAA-AGGUUGCCCCCGGUGACCUUUGCCCCCU------------U .-..-.....(((((((......)))))))...................((((((..(.((((((((.....-.)))))))).)(....).))))))....------------. ( -31.10) >DroSim_CAF1 51476 98 - 1 CCCC-GAAUCAGUGCUUAAUUGGAAGCACUUUUAACGCUCGACUUGACUGGCAAACAGAGGGCGACCCACAA-AGGUUGCCCCCGGUGACCUUUGCCCCC-------------- ....-.....(((((((......)))))))...................((((((..(.((((((((.....-.)))))))).)(....).))))))...-------------- ( -31.10) >DroEre_CAF1 49558 99 - 1 GCCCGGAAUCAGUGCUUAAUUGGAAGCACUUUUAACGCUCGACUUGACUGGCAAACAGUGAGCGAGCCGCAA-AGGUUGCCCCCGGUGACCUUUGCCCCC-------------- ....((....(((((((......)))))))......(((((.(((.((((.....)))))))))))).((((-((((..((...))..))))))))))..-------------- ( -41.00) >DroYak_CAF1 48236 113 - 1 CCCCGAAAUCAGUGCUUAAUUGGAAGCACUUUUAACGCUCGACUUGACUGGCAAACAGGGAGCAGCCCACAA-AGGUUGCCCCCGGUGACCUUUGCCCCCUGUCCCCUGCCCCU ..........(((((((......)))))))......(((.(......).)))...(((((..(((....(((-((((..((...))..)))))))....)))..)))))..... ( -38.60) >DroPer_CAF1 62502 101 - 1 CCCCGAAAUCAGUGCUUAAUUGGCAGCACUUUUAAUGCUUGACUUCCCCGUAAACGGGAAAGCAGGCCGCAA-AGGUUGCCAACAGAAACCUUCCCC--UUGA----------A ...................((((((((.((((....(((((.(((.((((....)))).))))))))...))-))))))))))..............--....----------. ( -30.20) >consensus CCCC_GAAUCAGUGCUUAAUUGGAAGCACUUUUAACGCUCGACUUGACUGGCAAACAGAGAGCGACCCACAA_AGGUUGCCCCCGGUGACCUUUGCCCCC______________ ..........(((((((......))))))).....(((((.......(((.....))).))))).....(((.(((((((.....))))))))))................... (-21.86 = -21.70 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:34 2006