Locus 1177

Sequence ID 2L_DroMel_CAF1
Location 3,218,576 – 3,218,666
Length 90
Max. P 0.934297
window1909

overview

Window 9

Location 3,218,576 – 3,218,666
Length 90
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 85.08
Mean single sequence MFE -26.65
Consensus MFE -22.92
Energy contribution -23.05
Covariance contribution 0.13
Combinations/Pair 1.07
Mean z-score -2.04
Structure conservation index 0.86
SVM decision value 1.24
SVM RNA-class probability 0.934297
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3218576 90 + 22407834
UGGCGUCUGGCAAUCAUAAAGAGGCGCGGAUGAAACUGCAUUGCUGGCCAUUUUAAAAUUUGUGAAAAAUGCACGGAUGCCGGAAAG------------------UAA
.(((((((((((.(((((((..(((.((((((......)))..)))))).........)))))))....))).))))))))......------------------... ( -26.40)
>DroSec_CAF1 52656 102 + 1
UGGCGUCUGGCAAUCAUAAAGAGGCGCGGAUGAAACUGCAUUGCUGGCCAUUUUAAAAUUUGUGGAAAAUGCACGGACGCCGGAAAAU------GUAUAUGUGUAUAA
.(((((((((((..........(((((((......))))...)))..((((..........))))....))).))))))))......(------((((....))))). ( -28.30)
>DroSim_CAF1 51134 102 + 1
UGGCGUCUGGCAAUCAUAAAGAGGCGCGGAUGAAACUGCAUUGCUGGCCAUUUUAAAAUUUGUGAAAAAUGCACGGACGCCGGAAAAU------GUAUAUGUGUAUAA
.(((((((((((.(((((((..(((.((((((......)))..)))))).........)))))))....))).))))))))......(------((((....))))). ( -28.80)
>DroEre_CAF1 49217 108 + 1
UGGCGUCUGGCAAUCAUAAAGAGGCGAGGCUGAAACUGCAAUGCUGGCCAUUUUAAAAUUUGUAAAAAAUGCACGAACGCUGUAAAAAAUACAUAUAUAUAUAUGUAA
.(((((.(((((....(((((.(((..(((............))).))).)))))...(((....))).))).)).)))))........(((((((....))))))). ( -23.10)
>consensus
UGGCGUCUGGCAAUCAUAAAGAGGCGCGGAUGAAACUGCAUUGCUGGCCAUUUUAAAAUUUGUGAAAAAUGCACGGACGCCGGAAAAU______GUAUAUGUGUAUAA
.((((((((((.....(((((.(((.(((.((......))...)))))).)))))..((((.....)))))).))))))))........................... (-22.92 = -23.05 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:33 2006