Locus 1175

Sequence ID 2L_DroMel_CAF1
Location 3,217,207 – 3,217,315
Length 108
Max. P 0.711518
window1906

overview

Window 6

Location 3,217,207 – 3,217,315
Length 108
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 94.69
Mean single sequence MFE -28.68
Consensus MFE -23.54
Energy contribution -23.54
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.54
Structure conservation index 0.82
SVM decision value 0.38
SVM RNA-class probability 0.711518
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3217207 108 - 22407834
CGCCGCCUAUUUAAAAUGCAAUUUAAU-UCCUCGCAAGGACAAUGACAGGGCCC---GCACACGCAC------UUGCGCAUUUUUAACACAAAGGUGGCGCAAAAAGGACUCCAGGAA
((((((((....(((((((........-((((....))))....(.((((((..---......)).)------)))))))))))........)))))))).................. ( -27.00)
>DroSec_CAF1 51320 111 - 1
CGCCGCCUAUUUAAAAUGCAAUUUAAU-UCCUCGCAAGGACAAUGACAGGGCCCCCUGCACACGCAC------UCGCGCAUUUUUAACACAAAGGUGGCGCAAAAAGGACUCCAGGAA
((((((((....(((((((........-((((....))))...((.((((....))))))...((..------..)))))))))........)))))))).................. ( -30.40)
>DroSim_CAF1 49762 111 - 1
CGCCGCCUAUUUAAAAUGCAAUUUAAU-UCCUCGCAAGGACAAUGACAGGGCCCCCUGCACACGCAC------UCGCGCAUUUUUAACACAAAGGUGGCGCAAAAAGGACUCCAGGAA
((((((((....(((((((........-((((....))))...((.((((....))))))...((..------..)))))))))........)))))))).................. ( -30.40)
>DroEre_CAF1 47905 108 - 1
CGCCGCCUAUUUAAAAUGCAAUUUAAU-UCCUCGCAAGGACAAUGACAGGGCCC---GCACACGCAC------UUGCGCAUUUUUAACACAAAGGUGGCGCAAAAAGGACUCCAAGAA
((((((((....(((((((........-((((....))))....(.((((((..---......)).)------)))))))))))........)))))))).................. ( -27.00)
>DroYak_CAF1 46499 114 - 1
CGCCGCCUAUUUAAAAUGCAAUUUAAUUUCCUCGCAAGGACAAUGACAGGGCCC---GCACACGCACUUGCACUUGCGCAUUUUUAACACAAAGGUGGCGCAA-AAGGACUCCAGGAA
((((((((....(((((((.........((((....))))(((((.((((((..---......)).)))))).))).)))))))........))))))))...-.............. ( -28.60)
>consensus
CGCCGCCUAUUUAAAAUGCAAUUUAAU_UCCUCGCAAGGACAAUGACAGGGCCC___GCACACGCAC______UUGCGCAUUUUUAACACAAAGGUGGCGCAAAAAGGACUCCAGGAA
((((((((....(((((((.........((((....)))).................((....))............)))))))........)))))))).................. (-23.54 = -23.54 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:30 2006