Locus 1173

Sequence ID 2L_DroMel_CAF1
Location 3,214,131 – 3,214,238
Length 107
Max. P 0.971154
window1903

overview

Window 3

Location 3,214,131 – 3,214,238
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 95.30
Mean single sequence MFE -27.28
Consensus MFE -26.92
Energy contribution -26.76
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -1.41
Structure conservation index 0.99
SVM decision value 1.67
SVM RNA-class probability 0.971154
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3214131 107 + 22407834
CACUAGACUUGGAGCCAAAUUUUUUUCCCUCUAGCUGCUGCUGGCACAAUAACAACACGUAAAUCUGGCAGCAGCUGACAAGUACAGAAUUUUAGCUUGUUACGCUG
..((..((((((((..(((....)))..)))((((((((((..(.......((.....))....)..)))))))))).)))))..)).....((((.......)))) ( -28.90)
>DroSec_CAF1 48272 106 + 1
CACUUGACUC-GAGCCCAAUUUUUUCCUCUCUGGCUGCUGCUGGCACAAUAACAACACGUAAAUCUGGCAGCAGCUGACAAGUACAGAAUUUUAGCUUGUUACGCUG
..........-.(((.................(((((((((..(.......((.....))....)..)))))))))(((((((...........)))))))..))). ( -26.60)
>DroSim_CAF1 46706 106 + 1
CACUAGACUC-GAGCCAAAUUUUUUCCUCUCUGGCUGCUGCUGGCACAAUAACAACACGUAAAUCUGGCAGCAGCUGACAAGUACAGAAUUUUAGCUUGUUACGCUG
..........-.(((.................(((((((((..(.......((.....))....)..)))))))))(((((((...........)))))))..))). ( -26.60)
>DroEre_CAF1 44858 106 + 1
CACUAGACUU-GAGCUAAGUUUUUUCCUCUCUGGCUGCUGCUGGCACAAUAACAACACGUAAAUCUGGCAGCAGCUGACAAGUACAGAAUUUUAGCUUGUUACGCUG
.....(((..-((((((((.((((..((.((.(((((((((..(.......((.....))....)..)))))))))))..))...)))).)))))))))))...... ( -27.10)
>DroYak_CAF1 43467 106 + 1
CACCAGACUU-GAGCUCGAUUUUUUCCUCUCUGGCUGCUGCUGGCACAAUAACAACACGUAAAUCUGGCAGCAGCUGACAAGUACAGAAUUUUAGCUUGUUACGCUG
..(((((...-(((...((.....))))))))))..(((((((.((.....((.....)).....)).)))))))((((((((...........))))))))..... ( -27.20)
>consensus
CACUAGACUU_GAGCCAAAUUUUUUCCUCUCUGGCUGCUGCUGGCACAAUAACAACACGUAAAUCUGGCAGCAGCUGACAAGUACAGAAUUUUAGCUUGUUACGCUG
............(((.................(((((((((..(.......((.....))....)..)))))))))(((((((...........)))))))..))). (-26.92 = -26.76 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:27 2006