Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 377,862 – 378,136 |
Length | 274 |
Max. P | 0.994870 |
Location | 377,862 – 377,982 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.42 |
Mean single sequence MFE | -41.28 |
Consensus MFE | -38.50 |
Energy contribution | -38.58 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.07 |
Mean z-score | -1.40 |
Structure conservation index | 0.93 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.907977 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 377862 120 + 22407834 CUUUCCCAUAGGCCGAACCGCCAGAAAGAGGCGGAGUCCGCCUCCCGGCCACCUGCCGCCUCACCUGCGACACCUGCGACGAUCGAUCGACAUGCUCCGAUCGCAUCGCUCCCUCUCGCU ..........(((......))).....(((((((((...(((....)))...)).)))))))....((((.....((((....((((((........))))))..))))......)))). ( -41.50) >DroSec_CAF1 45494 120 + 1 CCUUCCCAUAGGCCGAACCGCCAGAAAGAGGCGGAGUCCGCCUCCCGGCCACCUGCCGCCUCACCUGCGACACCUGCGACGAUCGAUCGACACGCUCUGAUCGCAUCGCUCCCUCUCGCU ..........(((......))).....(((((((((...(((....)))...)).)))))))....((((.....(((((((((((.((...)).)).)))))..))))......)))). ( -40.20) >DroSim_CAF1 46137 120 + 1 CCUUCCCAUAGGCCGAACCGCCAGAAAGAGGCGGAGUCCGCCUCCCGGCCACCUGCCGCAUCACGUGCGACACCUGCGACGAUCGAUCGACACGCUCCGAUCGCAUCGCUCCCUCUCGCU ..........(((((...(....)...(((((((...))))))).)))))...((.(((((...))))).))...((((((((((((((........)))))).)))).......)))). ( -41.61) >DroEre_CAF1 52481 120 + 1 CGUUCCCAUAGGCCGAACCGCCAGAAAGAGGCGGAGUCCGCCUCCCGACCACCUGCCGCCUCACCUGCGACACCUGCGGCGAUCGAUCGACACGCUCCGAUCGCAUCGCUCCCUCUCGCU ..........(((......))).....(((((((.(((........)))......)))))))....((((.....(.((((((((((((........)))))).)))))).)...)))). ( -40.10) >DroYak_CAF1 46631 120 + 1 CCUUCCCAUAGGCCGAAUCGCCAGAAGGAGGCGGAGUCCGCCGCCCGGCCACCUGCCGCCUCACCUGCGACACCUGCGACGAUCGAUCGACACGCUCCGAUCGCAUCGCUCCCUCUCGCU (((......))).....((((.((...(((((((((...(((....)))...)).)))))))..)))))).....((((((((((((((........)))))).)))).......)))). ( -43.01) >consensus CCUUCCCAUAGGCCGAACCGCCAGAAAGAGGCGGAGUCCGCCUCCCGGCCACCUGCCGCCUCACCUGCGACACCUGCGACGAUCGAUCGACACGCUCCGAUCGCAUCGCUCCCUCUCGCU ..........(((......))).....(((((((((...(((....)))...)).)))))))....((((.....((((....((((((........))))))..))))......)))). (-38.50 = -38.58 + 0.08)
Location | 377,902 – 378,022 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.08 |
Mean single sequence MFE | -42.16 |
Consensus MFE | -36.52 |
Energy contribution | -36.80 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.07 |
Mean z-score | -2.14 |
Structure conservation index | 0.87 |
SVM decision value | 2.52 |
SVM RNA-class probability | 0.994870 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 377902 120 + 22407834 CCUCCCGGCCACCUGCCGCCUCACCUGCGACACCUGCGACGAUCGAUCGACAUGCUCCGAUCGCAUCGCUCCCUCUCGCUCUGCGGCACUACGAAACACUAAAAACACUGGGAGGCCAGA (((((((((.....)))(((.((...((((.....((((....((((((........))))))..))))......))))..)).)))......................))))))..... ( -40.50) >DroSec_CAF1 45534 120 + 1 CCUCCCGGCCACCUGCCGCCUCACCUGCGACACCUGCGACGAUCGAUCGACACGCUCUGAUCGCAUCGCUCCCUCUCGCUCUGCGGCACUACGAAAGACUAAAAACACUGGGAGGCCAGA ((((((((.....((((((.......((((.....(((((((((((.((...)).)).)))))..))))......))))...))))))...(....)..........))))))))..... ( -41.60) >DroSim_CAF1 46177 120 + 1 CCUCCCGGCCACCUGCCGCAUCACGUGCGACACCUGCGACGAUCGAUCGACACGCUCCGAUCGCAUCGCUCCCUCUCGCUCUGCAGCACUACGAAACACUAAAAACACUGGGAGGCCAGA (((((((((.....))).......((((..((...((((((((((((((........)))))).)))).......))))..))..))))....................))))))..... ( -39.41) >DroEre_CAF1 52521 120 + 1 CCUCCCGACCACCUGCCGCCUCACCUGCGACACCUGCGGCGAUCGAUCGACACGCUCCGAUCGCAUCGCUCCCUCUCGCUCUGCGGCACUAGGAAGCACUGGAAGCACUGGGAGGCCAGA (((((((......((((((.......((((.....(.((((((((((((........)))))).)))))).)...))))...))))))((((......))))......)))))))..... ( -46.40) >DroYak_CAF1 46671 120 + 1 CCGCCCGGCCACCUGCCGCCUCACCUGCGACACCUGCGACGAUCGAUCGACACGCUCCGAUCGCAUCGCUCCCUCUCGCUCUGCGGCACUAGGAAGCAGUUAAAACGCUGGGAGGCCAGA ......(((.....)))(((((.((.(((....((((((((((((((((........)))))).)))).))(((...(((....)))...)))..))))......))).))))))).... ( -42.90) >consensus CCUCCCGGCCACCUGCCGCCUCACCUGCGACACCUGCGACGAUCGAUCGACACGCUCCGAUCGCAUCGCUCCCUCUCGCUCUGCGGCACUACGAAACACUAAAAACACUGGGAGGCCAGA (((((((((.....)))(((.((...((((.....((((....((((((........))))))..))))......))))..)).)))......................))))))..... (-36.52 = -36.80 + 0.28)
Location | 378,022 – 378,136 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.53 |
Mean single sequence MFE | -31.20 |
Consensus MFE | -27.58 |
Energy contribution | -28.02 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.74 |
Structure conservation index | 0.88 |
SVM decision value | 1.67 |
SVM RNA-class probability | 0.971412 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 378022 114 + 22407834 AAACCACUCUCGCAACAUUGGAAAACAACAACUCCAACCGGUUGUUGU------UUCAGACCCACCAGAGUUUUCACCUGCGCGCCAACUGCUCACCGUGUAGUUUGCUGCCGGCUCUGG ..................(((.(((((((((((......)))))))))------)).....)))((((((......((.(((.((.((((((.......)))))).))))).)))))))) ( -33.30) >DroSec_CAF1 45654 114 + 1 AAACCACUCUCGCACCAUCGGAAAACAACAACUCCAACCGGUUGUUGU------UUCAGACCCACCAGAGUUUUCACCUGCGCGCCAACUGCUCACCGUGUAGUUUGCUGCCGGCUCUGG .................((.((((.((((((((......)))))))))------))).))....((((((......((.(((.((.((((((.......)))))).))))).)))))))) ( -33.30) >DroSim_CAF1 46297 114 + 1 AAACCACUCUCGCAACAUCGGAAAACAACAACUCCAACCGGUUGUUGU------UUCAGACCCACCAGAGUUUUCACCUGCGCGCCAACUGCUCACCGUGUAGUUUGCUGCCGGCUCUGG .................((.((((.((((((((......)))))))))------))).))....((((((......((.(((.((.((((((.......)))))).))))).)))))))) ( -33.30) >DroEre_CAF1 52641 114 + 1 AAACCACUCUCGCAACAUCGGAAAACAACAACUCCAACCGGUUGUUGU------CUCAGACCCACCAUACUUUUCACCUGCGCGCCAACUGCUCACCGUGUAGUUUGCUGCCGGCUCUGG ..................((((..(((((((((......)))))))))------......................((.(((.((.((((((.......)))))).))))).)).)))). ( -26.40) >DroYak_CAF1 46791 120 + 1 AAACCACUCUCGCAACAUCGGAAAACAACAACUCCAACCGGUUGUUGUCGUCGCCUCAGACCCACCAGACUUUUCACCUGCGCGCCAAUUGCUCACCGUGUAGUUUGCUGCCGGCUCUGG ...................((...(((((((((......))))))))).(((......))))).(((((.........((.(((.....))).))(((.((((....))))))).))))) ( -29.70) >consensus AAACCACUCUCGCAACAUCGGAAAACAACAACUCCAACCGGUUGUUGU______UUCAGACCCACCAGAGUUUUCACCUGCGCGCCAACUGCUCACCGUGUAGUUUGCUGCCGGCUCUGG ........................(((((((((......)))))))))................((((((......((.(((.((.((((((.......)))))).))))).)))))))) (-27.58 = -28.02 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:21 2006