Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,211,567 – 3,211,661 |
Length | 94 |
Max. P | 0.650485 |
Location | 3,211,567 – 3,211,661 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 85.86 |
Mean single sequence MFE | -26.30 |
Consensus MFE | -18.48 |
Energy contribution | -19.88 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.84 |
Structure conservation index | 0.70 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650485 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3211567 94 + 22407834 GGCUGGCAUAUGCGAGU-UGCAGCGCUGCAAUUUGACUUUAAUGCAUUUUUAAUUUGUGCAUGCGUUGCUCUGCACCUA--UGUGCUUGAGUUCCUA .....((((...(((((-((((....)))))))))........((((.........))))))))(..((((.((((...--.))))..))))..).. ( -27.50) >DroSec_CAF1 45748 94 + 1 GGCUGGCAUAUGCGAGU-UGCACCGCUGCAAUUUGACUUUAAUGCAUUUUUAAUUUGUGCAUGCGUUGCUCUGCACCUA--UGUGCUUGAGUUCCUA .....((((...(((((-((((....)))))))))........((((.........))))))))(..((((.((((...--.))))..))))..).. ( -26.50) >DroSim_CAF1 44137 94 + 1 GGCUGGCAUAUGCGAGU-UGCAGCGCUGCAAUUUGACUUUAAUGCAUUUUUAAUUUGUGCAUGCGUUGCUCUGCACCUA--UGUGCUUGAGUUCCUA .....((((...(((((-((((....)))))))))........((((.........))))))))(..((((.((((...--.))))..))))..).. ( -27.50) >DroEre_CAF1 42329 81 + 1 ----------------UGUGCCGCGCUGCAAUUUGACUUUAAUGCAUUUUUAAUUUGUGCAUGCGUCGCACUGCACCUACAUAUGCACGAGAUUCCA ----------------.((((.((((((((..((((.............))))....)))).)))).))))((((........)))).......... ( -18.22) >DroYak_CAF1 40809 95 + 1 GGCUGGCAUAUGCGAGUGUGCAGCGCUGCAAUUUGACUUUAAUGCAUUUUUAAUUUGUGCAUGCGUCGCGCUGCACCUA--UAUGCUUGGAAUCCUA ..(.(((((((...((.(((((((((........(((....((((((.........))))))..)))))))))))))))--)))))).)........ ( -31.80) >consensus GGCUGGCAUAUGCGAGU_UGCAGCGCUGCAAUUUGACUUUAAUGCAUUUUUAAUUUGUGCAUGCGUUGCUCUGCACCUA__UGUGCUUGAGUUCCUA .(((.((....)).)))..(((((((((((..((((.............))))....)))).)))))))...((((......))))........... (-18.48 = -19.88 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:16 2006