Locus 1166

Sequence ID 2L_DroMel_CAF1
Location 3,193,502 – 3,193,594
Length 92
Max. P 0.850876
window1887

overview

Window 7

Location 3,193,502 – 3,193,594
Length 92
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 80.91
Mean single sequence MFE -35.68
Consensus MFE -23.90
Energy contribution -23.99
Covariance contribution 0.09
Combinations/Pair 1.27
Mean z-score -2.14
Structure conservation index 0.67
SVM decision value 0.79
SVM RNA-class probability 0.850876
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3193502 92 + 22407834
GCACAUUACUCAUACGCCGCGUGGCCGGGGCAGGAAUGAAGCUUAAAUCACUGCG-------UGUCGGCCAUUUCGCGUGUGUGCGAU--UGUGUGCGUUA
((((((...((.((((((((((((((((.((((..((.........))..)))).-------..)))))))...)))).))))).)).--.)))))).... ( -38.90)
>DroPse_CAF1 44828 95 + 1
GCACAUUACUCAUACGCCGUGUUGCUCUCGAAC---AAGUGCUUAAAUCACUGGCCUCCUCCUAUAGGUGCCUCAGUGAAAGUGCGUCUAUGUGUGGG---
........((((((((...((((.......)))---).(..(((...((((((((..(((.....))).)))..))))))))..).....))))))))--- ( -24.80)
>DroSec_CAF1 30228 92 + 1
GCACAUUACUCAUACGCCGCGUGGCCGGGGCAGGAAUGAAGCUUAAAUCACUGCG-------UGUCGGCCAUUUCGCGUCUGCGCGAU--UGUGUGCGUUA
.............(((((((((((((((.((((..((.........))..)))).-------..)))))))).(((((....))))).--.))).)))).. ( -33.70)
>DroSim_CAF1 33279 92 + 1
GCACAUUACUCAUACGCCGCGUGGCCGGGGCAGGAAUGAAGCUUAAAUCACUGCG-------UGUCGGCCAUUUCGCGUGUGCGCGAU--UGUGUGCGUUA
((((((..(.(((((((...((((((((.((((..((.........))..)))).-------..))))))))...))))))).)....--.)))))).... ( -37.00)
>DroEre_CAF1 31388 92 + 1
GCACAUUACUCAUACGCCGUGUGGCCGGGGCAGGCCAAGAGCUUAAAUCACUGCG-------UGUCGGCCAUUUGGCGUGUGUGCGAG--UGUGUGAGUUA
(((((((...(((((((((.(((((((..(((.((...((.......))...)).-------)))))))))).)))))))))....))--)))))...... ( -42.20)
>DroYak_CAF1 29686 92 + 1
GCACAUUACUCAUACGCCGUGUGGCCGGGGCAGGCAAAGAGCUUAAAUCACUGCG-------UGUCGGCCAUUUCGCGUGUGUGCGAU--UGUGUGAGUUA
((((((..(.(((((((...(((((((..(((.(((..((.......))..))).-------))))))))))...))))))).)..).--)))))...... ( -37.50)
>consensus
GCACAUUACUCAUACGCCGCGUGGCCGGGGCAGGAAAAAAGCUUAAAUCACUGCG_______UGUCGGCCAUUUCGCGUGUGUGCGAU__UGUGUGCGUUA
(((((...(.(((((((.(.(((((((..(((........((..........))........)))))))))).).))))))).)......)))))...... (-23.90 = -23.99 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:13 2006