Locus 1164

Sequence ID 2L_DroMel_CAF1
Location 3,184,733 – 3,184,831
Length 98
Max. P 0.759826
window1885

overview

Window 5

Location 3,184,733 – 3,184,831
Length 98
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 75.95
Mean single sequence MFE -29.22
Consensus MFE -11.66
Energy contribution -12.24
Covariance contribution 0.58
Combinations/Pair 1.15
Mean z-score -2.25
Structure conservation index 0.40
SVM decision value 0.50
SVM RNA-class probability 0.759826
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3184733 98 - 22407834
AAUAUAUGU---UAUGUGACCGCGGCCAAGGGGUCGUAUGAUUAAUAUACAUAUAUGGCCCAUCCGCCAUGGCCAACUAUCGCAUUUCCAGCGGACUUUCG
.........---.......(((((((....((((((((((...........))))))))))....)))...((........)).......))))....... ( -25.90)
>DroSec_CAF1 21521 94 - 1
AAUAUAUGU---UAUGUGCGCGCGGCCAAAGGGUCGUAUGAUUAAUAU----AUAUGGGCCAUCCGCCAUGGCCAACUAUCGUAUUUCCAGUGGACUUUCG
.((((((((---((....((..(((((....)))))..))..))))))----)))).((((((.....))))))..((((.(......).))))....... ( -27.30)
>DroSim_CAF1 20902 94 - 1
AAUAUAUGU---UAUGUGCGCGCGGCCAAAGGGUCGUAUGAUUAAUAU----AUAUGGCCCAUCCGCCAUGGCCAACUAUCGCAUUUCCAGUGGACUUUCG
.((((((((---((....((..(((((....)))))..))..))))))----))))((((..........)))).....((((.......))))....... ( -24.90)
>DroEre_CAF1 21152 87 - 1
AAUA--------UAUGUUGGCCCGGCCAAUGGGUCGUAUGAUUAAUA------UAUGGCCCAUCCGCCAUGGCCAACUAUCGCAUUUGCAGCGGACUUUCG
....--------...(((((((.(((..((((((((((((.....))------))))))))))..)))..)))))))..((((.......))))....... ( -36.80)
>DroYak_CAF1 20693 95 - 1
AAUACACAUGUGUAUGUUGGCCCGGCCAAUGGGUCGUAUGAUUAAUA------UAUGGCCCAUCCGCCAUGGCCAACAAUCGCAUUUCCAGUCGACUUCCA
.......(((((..((((((((.(((..((((((((((((.....))------))))))))))..)))..))))))))..)))))................ ( -39.10)
>DroAna_CAF1 23695 91 - 1
GAGAU-------CAGGUC-CGUCGGCCA--GGGUCCUGAAAUUAAUGUAUACCGAGUGAUCAAUCGCGUCCGCCAACAAUUGCAUUUCCACUUGUCUCUCG
(((((-------((((((-(........--))).))))).............((((((...(((.(((............))))))..))))))..)))). ( -21.30)
>consensus
AAUAUAUGU___UAUGUGCGCGCGGCCAAAGGGUCGUAUGAUUAAUAU____AUAUGGCCCAUCCGCCAUGGCCAACUAUCGCAUUUCCAGUGGACUUUCG
.......................(((((..((((((((...............))))))))........)))))........................... (-11.66 = -12.24 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:11 2006