Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,183,401 – 3,183,499 |
Length | 98 |
Max. P | 0.578963 |
Location | 3,183,401 – 3,183,499 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 79.62 |
Mean single sequence MFE | -29.70 |
Consensus MFE | -19.60 |
Energy contribution | -20.30 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.13 |
Mean z-score | -1.33 |
Structure conservation index | 0.66 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578963 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3183401 98 - 22407834 ---------UUUUUCCG--UUCUUCCAGCUUAGCAAAUGGCCACAUCAAUAUGGCUGCCUUCGAUCGAAUGGCCGCCAUUGUUGGUGCAUUCACCAAACACAUGCAGGC ---------........--........((((.(((..((...........(((((.((((((....))).))).)))))..((((((....)))))).))..))))))) ( -26.90) >DroPse_CAF1 33823 101 - 1 -----UCU-UUGUUUUG--UGUGUGCAGCUUACAAAAUGGCCACAUCAAUAUGGCGGCCUUCGAUCGGAUGGCGGCCAUUGUCGGCGCGUUCACGAAGCACAUGCAGGC -----...-.(((((((--((..(((.(((.(((..((((((.(((....)))...((((((....))).)))))))))))).))))))..)))))))))......... ( -36.40) >DroWil_CAF1 21404 90 - 1 ----------U---------AUCUACAGAUUACCAAAUGGCCACAUCAAUAUAAAUGCCUUUGAUCGCAUGGCGGCCAUAGUUGGAGCAUUUACCAAGCAUAUGCAGGC ----------.---------............((((((((((.(..........((((........)))).).))))))..)))).((((...........)))).... ( -18.20) >DroYak_CAF1 19375 107 - 1 UUUCCUCUCUUUUCCCG--CCUUUCCAGCUUAGCAAAUGGCCACAUCAAUAUGGCUGCCUUCGAUCGAAUGGCGGCCAUUGUUGGGGCAUUCACCAAACACAUGCAGGC ................(--(((.((((((...((.....)).........((((((((((((....))).))))))))).))))))((((...........)))))))) ( -31.40) >DroAna_CAF1 20535 100 - 1 ---------AUUUCCCGUUCCGUUGCAGCUUAGCAAAUGGCCACAUCAAUAUGGCAGCCUUCGAUCGCAUGGCGGCCAUUGUUGGGGCAUUCACCAAGCACAUGCAGGC ---------.............(((((((((.(..((((.((.((.((..(((((.(((...........))).))))))).)))).))))..).))))...))))).. ( -28.90) >DroPer_CAF1 30385 101 - 1 -----UCU-UUGUUUUG--UGUGUGCAGCUUACAAAAUGGCCACAUCAAUAUGGCGGCCUUCGAUCGGAUGGCGGCCAUUGUCGGCGCGUUCACGAAGCACAUGCAGGC -----...-.(((((((--((..(((.(((.(((..((((((.(((....)))...((((((....))).)))))))))))).))))))..)))))))))......... ( -36.40) >consensus _________UUUUUCCG__UCUUUGCAGCUUACCAAAUGGCCACAUCAAUAUGGCUGCCUUCGAUCGAAUGGCGGCCAUUGUUGGCGCAUUCACCAAGCACAUGCAGGC .......................................(((...((((((((((.((((((....))).))).))))).))))).((((...........)))).))) (-19.60 = -20.30 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:10 2006