Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 377,033 – 377,142 |
Length | 109 |
Max. P | 0.720067 |
Location | 377,033 – 377,142 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.84 |
Mean single sequence MFE | -29.04 |
Consensus MFE | -23.56 |
Energy contribution | -24.36 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.63 |
Structure conservation index | 0.81 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.720067 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 377033 109 - 22407834 UUAUAUAAGCGGGCCUUAUACAUCCACAGAUCCAUUCCAGCGGCAUUUUGCACUGGAAGCGUCCCC-----------CUCCUUCGACCAUCAUUCGCUGCCCAAUUUGCUUGUAUCGCAA ..((((((((((((.....................(((((..((.....)).)))))((((.....-----------.................)))))))).....))))))))..... ( -24.15) >DroSec_CAF1 44666 107 - 1 UGAUAUAAGCGGGCCUUAUACAUCGAGAGUUCCAUUCCAGCGGCAUUUUGCACUGGAACCUGCCCC-------------CCUUCGACCAUCAUUCGCUGCCCAAUUUGCUUGUAUCGCAA .(((((((((((((.........(....).....((((((..((.....)).))))))...)))).-------------....(((.......)))...........))))))))).... ( -27.70) >DroSim_CAF1 45309 107 - 1 UGAUAUAAGCGGGCCUUAUACAUCGAGAGUUCCAUUCCAGCGGCAUUUUGCACUGGAACCUGCCCC-------------CCUUCGACCAUGAUUCGCUGCCCAAUUUGCUUGAAUCGCAA ........((((((.........(....).....((((((..((.....)).))))))...)))).-------------...........((((((..((.......)).)))))))).. ( -24.50) >DroEre_CAF1 51660 109 - 1 UGAUAUAAGCGGGCCUUAUACAUCGACGGAUCCAUUCCAGCGGCAUUUUGCACUGGAAGCUGACCC-----------CCUCCUCGACCACCAUUCGCUGCCCAAUUUGCUUGUAUCGCAA .(((((((((((((........((((.(((((..((((((..((.....)).))))))...))...-----------..)))))))............)))).....))))))))).... ( -30.85) >DroYak_CAF1 45809 120 - 1 UGAUAUAAGCGGGCCUUAUACAUCGACAGAUCCAUUCCAGCGGCAUUUUGCACUGGAAGCCGGCUCCCCUCCCCGCUCCUCCUCCAGCAGCACUCGCUGCCCAAUUUGCUUGUAUCGCAA .((((((((((((((......(((....)))...((((((..((.....)).))))))...)))))....................(((((....))))).......))))))))).... ( -38.00) >consensus UGAUAUAAGCGGGCCUUAUACAUCGACAGAUCCAUUCCAGCGGCAUUUUGCACUGGAAGCUGCCCC___________C_CCUUCGACCAUCAUUCGCUGCCCAAUUUGCUUGUAUCGCAA .(((((((((((((.......(((....)))...((((((..((.....)).))))))........................................)))).....))))))))).... (-23.56 = -24.36 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:18 2006