Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,169,576 – 3,169,683 |
Length | 107 |
Max. P | 0.992262 |
Location | 3,169,576 – 3,169,683 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 85.94 |
Mean single sequence MFE | -36.92 |
Consensus MFE | -34.74 |
Energy contribution | -34.30 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -1.40 |
Structure conservation index | 0.94 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.764311 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3169576 107 + 22407834 CAAGAGCAGUCGUGGCCGAGCGGUUAAGGCGUCUGACUAGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGACUGCGAUGACAAG--AGUUAC-------UUUUUU .....((((((((((((....)))))..((((((((.......))))))((((...))))))(((((.......))))))))))))..((((...--.)))).-------...... ( -33.60) >DroVir_CAF1 8805 107 + 1 CACAAGCAGCCGUGGCCGAGCGGUUAAGGCGUCUGACUAGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGGCUGCGAAACAAGG--UGUUUC-------UUUUUU .....((((((((((((....)))))..((((((((.......))))))((((...))))))(((((.......))))))))))))(((((....--.)))))-------...... ( -39.10) >DroPse_CAF1 21154 114 + 1 AACAAGCAGCCGUGGCCGAGCGGUUAAGGCGUCUGACUAGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGGCUGCGUUCCGUUGGAUGUUUUUU--UUCCGUUUU ........((....)).((((((..((((((((..((.......((((.....))))(((((((((..(((........))))))))))))))..))))))))..--..)))))). ( -39.40) >DroEre_CAF1 6057 107 + 1 CAAGAGCAGUCGUGGCCGAGCGGUUAAGGCGUCUGACUAGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGACUGCGAUGAAUUG--AGUUUC-------UUUUUU .....((((((((((((....)))))..((((((((.......))))))((((...))))))(((((.......))))))))))))...(((...--...)))-------...... ( -33.10) >DroMoj_CAF1 5037 107 + 1 CAGAAGCAGCCGUGGCCGAGCGGUUAAGGCGUCUGACUAGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGGCUGCGAGAGAUUU--GAAUUC-------AUUUUU ((((....(((.(((((....))))).))).))))....(((.((((((...((((.(.((((((((.......)))))..))).).))))))))--)).)))-------...... ( -38.30) >DroPer_CAF1 17738 116 + 1 AACAAGCAGCCGUGGCCGAGCGGUUAAGGCGUCUGACUAGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGGCUGCGUUUCGUCGGAUGUUUUUCAUUCCUUUUUU .....((((((((((((....)))))..((((((((.......))))))((((...))))))(((((.......))))))))))))........(((((.....)))))....... ( -38.00) >consensus CACAAGCAGCCGUGGCCGAGCGGUUAAGGCGUCUGACUAGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGGCUGCGAUACAUUG__UGUUUC_______UUUUUU .....((((((((((((....)))))..((((((((.......))))))((((...))))))(((((.......)))))))))))).............................. (-34.74 = -34.30 + -0.44)
Location | 3,169,576 – 3,169,683 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 85.94 |
Mean single sequence MFE | -35.00 |
Consensus MFE | -33.86 |
Energy contribution | -33.42 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -2.18 |
Structure conservation index | 0.97 |
SVM decision value | 2.32 |
SVM RNA-class probability | 0.992262 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3169576 107 - 22407834 AAAAAA-------GUAACU--CUUGUCAUCGCAGUCGGUAGGAUUCGAACCUACGCUCCCAGAGGGAAUCUGAUUUCUAGUCAGACGCCUUAACCGCUCGGCCACGACUGCUCUUG ......-------......--.........((((((((((((.......)))))(((.....((((..((((((.....))))))..))))........)))..)))))))..... ( -32.02) >DroVir_CAF1 8805 107 - 1 AAAAAA-------GAAACA--CCUUGUUUCGCAGCCGGUAGGAUUCGAACCUACGCUCCCAGAGGGAAUCUGAUUUCUAGUCAGACGCCUUAACCGCUCGGCCACGGCUGCUUGUG ......-------(((((.--....)))))((((((((((((.......)))))(((.....((((..((((((.....))))))..))))........)))..)))))))..... ( -38.62) >DroPse_CAF1 21154 114 - 1 AAAACGGAA--AAAAAACAUCCAACGGAACGCAGCCGGUAGGAUUCGAACCUACGCUCCCAGAGGGAAUCUGAUUUCUAGUCAGACGCCUUAACCGCUCGGCCACGGCUGCUUGUU .....(((.--........)))........((((((((((((.......)))))(((.....((((..((((((.....))))))..))))........)))..)))))))..... ( -35.72) >DroEre_CAF1 6057 107 - 1 AAAAAA-------GAAACU--CAAUUCAUCGCAGUCGGUAGGAUUCGAACCUACGCUCCCAGAGGGAAUCUGAUUUCUAGUCAGACGCCUUAACCGCUCGGCCACGACUGCUCUUG ......-------(((...--...)))...((((((((((((.......)))))(((.....((((..((((((.....))))))..))))........)))..)))))))..... ( -32.12) >DroMoj_CAF1 5037 107 - 1 AAAAAU-------GAAUUC--AAAUCUCUCGCAGCCGGUAGGAUUCGAACCUACGCUCCCAGAGGGAAUCUGAUUUCUAGUCAGACGCCUUAACCGCUCGGCCACGGCUGCUUCUG ......-------......--.........((((((((((((.......)))))(((.....((((..((((((.....))))))..))))........)))..)))))))..... ( -34.12) >DroPer_CAF1 17738 116 - 1 AAAAAAGGAAUGAAAAACAUCCGACGAAACGCAGCCGGUAGGAUUCGAACCUACGCUCCCAGAGGGAAUCUGAUUUCUAGUCAGACGCCUUAACCGCUCGGCCACGGCUGCUUGUU ......(((.((.....)))))(((((...((((((((((((.......)))))(((.....((((..((((((.....))))))..))))........)))..)))))))))))) ( -37.42) >consensus AAAAAA_______GAAACA__CAAUGCAUCGCAGCCGGUAGGAUUCGAACCUACGCUCCCAGAGGGAAUCUGAUUUCUAGUCAGACGCCUUAACCGCUCGGCCACGGCUGCUUGUG ..............................((((((((((((.......)))))(((.....((((..((((((.....))))))..))))........)))..)))))))..... (-33.86 = -33.42 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:02 2006