Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,166,677 – 3,166,784 |
Length | 107 |
Max. P | 0.672467 |
Location | 3,166,677 – 3,166,784 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 91.54 |
Mean single sequence MFE | -24.98 |
Consensus MFE | -17.88 |
Energy contribution | -18.56 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.04 |
Mean z-score | -2.26 |
Structure conservation index | 0.72 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.672467 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3166677 107 + 22407834 ACGUAGAUCAAAAUUCAAUUUGUAUAAAUAAUACGAGUAUUUGCGCAAAUUUGGCAAAUUGCCUGCUAACUAAACUGGAAGCAAUUGUGCGCAGAUUUAUCAUUGCC ..(((((((........((((((((.....))))))))...((((((.....(((.....)))((((..(......)..))))....)))))))))))))....... ( -28.40) >DroSec_CAF1 2747 107 + 1 ACUCAGAUCAAAAUUCAAUUUGUAUGAAUAAUACGAGUAUUUGCGCAAAAUUGGCAAAUUGCCUGCAAACUAAACUGGAAGCAAUUGUGCGCUGAUUUAUUAUUGCC ....((((((.......((((((((.....))))))))....(((((.(((((((.....))).((...(......)...)))))).)))))))))))......... ( -23.90) >DroSim_CAF1 2775 107 + 1 ACUCAGAUCAAAAUUCAAUUUGUAUGAAUAAUACGAGUAUUUGCGCAAAAUUGGCAAAUUGCCUGCUAACUAAACUGGAAGCAAUUGUGCGCAGAUUUAUUAUUGCC ....(((((........((((((((.....))))))))...((((((.(((((((.....))).(((..(......)..))))))).)))))))))))......... ( -27.60) >DroEre_CAF1 3592 101 + 1 ACGCAGAUCAAAAUUCAAUUUGUAUGAAUUAU------AUUUGCUCAAAUUUGGCAAAUUGCCUGCUAACUAAACUGGAAGCAAUUGUGUGCAGAUUUAUCAUUGCC ..((((.....((((((.......))))))..------((((((.((.....(((.....)))((((..(......)..))))....)).))))))......)))). ( -20.70) >DroYak_CAF1 2776 101 + 1 ACGCAGAUCAAAAUUCAAUUUGUGUGAAUUAU------AUUUGCGCAAAUUUGGCAAAUUGCCUGCUAACUAAACUGGAAGCAAUUGUGUGCAGAUUUAUCAUUGCC ((((((((.........))))))))....((.------(((((((((.....(((.....)))((((..(......)..))))....))))))))).))........ ( -24.30) >consensus ACGCAGAUCAAAAUUCAAUUUGUAUGAAUAAUACGAGUAUUUGCGCAAAUUUGGCAAAUUGCCUGCUAACUAAACUGGAAGCAAUUGUGCGCAGAUUUAUCAUUGCC ....(((((...(((((.......)))))............((((((.....(((.....)))((((..(......)..))))....)))))))))))......... (-17.88 = -18.56 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:00 2006