Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,161,786 – 3,161,890 |
Length | 104 |
Max. P | 0.500000 |
Location | 3,161,786 – 3,161,890 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 81.99 |
Mean single sequence MFE | -28.65 |
Consensus MFE | -17.53 |
Energy contribution | -18.40 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.30 |
Mean z-score | -1.73 |
Structure conservation index | 0.61 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3161786 104 - 22407834 UGCAAUGGACUUUGAUUCAAAAAUCUCACAAGACCUACCACAAAUCUGGGCAGGAAUAGGACGCCAGCCUCAUAGUUGGCGAUCCUCAGGCAGGGUUGGAUAUU .....(.(((((((...................(((.(((......)))..)))...(((((((((((......))))))).))))....))))))).)..... ( -28.20) >DroSec_CAF1 1809 104 - 1 UGCAUUGAACUUUGAUUCAAAAAUCUCACAAGACCUACCACAAAUCUGGGCAGGAAUAGGACGCCAGCCUCAUAGUUGGCGAUCCUCAGGCAGGGUUGGAUAUU ...(((.(((((((...................(((.(((......)))..)))...(((((((((((......))))))).))))....))))))).)))... ( -30.10) >DroSim_CAF1 1715 104 - 1 UGCAUUGAACUUUGAUUCAAAAAUCUCACAAGACCUACCACAAAUCUGGGCAGGAAUAGGACGCCAGCCUCAUAGUUGGCGAUCCUCAGGCAGGGUUGGAUAUU ...(((.(((((((...................(((.(((......)))..)))...(((((((((((......))))))).))))....))))))).)))... ( -30.10) >DroEre_CAF1 1711 104 - 1 UACAACGAACAUAGAUUAAACAAGCUCUCAAAACUUACCACGAAUCUAGGUAGGAAUAGGACGCCAACCUCGUAGUUGGCGAUUCUCAGGCAGGGCUGGAUAUU ......................(((((((....((((((.........))))))...(((((((((((......))))))).))))...).))))))....... ( -26.60) >DroWil_CAF1 2433 99 - 1 AACUUUGUUUUUUGUUGUGGAUGUUUUA-----CAUACCACAAAUCUUGGUAGGAAUAGGACACCUGCCUCAUAGUUGGCAAUGCGUAGACAUGGUUGGAUAUU ((((.(((((.((((((((((((.....-----))).)))).......((((((.........))))))........))))).....))))).))))....... ( -23.20) >DroYak_CAF1 1713 104 - 1 UACAAUUAACUUUGAUUUAACAAUCGCACCAAACCUACCACGAAUCUGGGUAGGAAUAGGACGCCAACCUCGUAGUUGGCGAUCCUCAGGCAGGGUUGAAUAUU .....((((((((((((....))))((......((((((.((....))))))))...(((((((((((......))))))).))))...))))))))))..... ( -33.70) >consensus UACAAUGAACUUUGAUUCAAAAAUCUCACAAGACCUACCACAAAUCUGGGCAGGAAUAGGACGCCAGCCUCAUAGUUGGCGAUCCUCAGGCAGGGUUGGAUAUU .....(.(((((((...................(((.((.........)).)))....((((((((((......))))))).))).....))))))).)..... (-17.53 = -18.40 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:59 2006