Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,153,467 – 3,153,597 |
Length | 130 |
Max. P | 0.626454 |
Location | 3,153,467 – 3,153,562 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 91.21 |
Mean single sequence MFE | -31.99 |
Consensus MFE | -23.12 |
Energy contribution | -22.88 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.12 |
Mean z-score | -2.01 |
Structure conservation index | 0.72 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.626454 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3153467 95 + 22407834 UGCACACUAAUUUGUUUGCAGUGCAUGGCCUUUGGUGGUGUUGGAGGUGGCGUCAAC-CCACAG------CCACAAUCAAACUGUAAACACCCCACCGCAAC (((.........((((((((((((((.(((...))).))))(((..((((.(....)-))))..------))).......)))))))))).......))).. ( -28.99) >DroSec_CAF1 9044 96 + 1 UGCACACUAAUUUGUUUGCAGUGCAUGCCCUUUGGUGGUGGUGGAGGUGGCGUCAACCCCACAG------CCACAAUCAAACUGUAAACACCCCACCGCAAC (((.........((((((((((.((.......))(((((.((((.(((.......))))))).)------))))......)))))))))).......))).. ( -30.59) >DroSim_CAF1 10156 95 + 1 UGCACACUAAUUUGUUUGCAGUGCACGGCCUUUGGUGGUGGUGGAGGUGGCGUCAAC-CCACAG------CCACAAUCAAACUGUAAACACCCCACCGCAAC (((.........((((((((((.(((.(((...))).)))((((..((((.(....)-))))..------))))......)))))))))).......))).. ( -33.29) >DroEre_CAF1 8390 95 + 1 UGCACACCGAUUUGUUUGCAGUGCAUGGCCUUUGGUGGUGGAGGUGGUGGCGUCAGC-CCACAG------UCACAAUCGAACUGUAAACACCCCACUGCAAC ((((((((((...((((((...))).)))..))))))((((.(((((.(((....))-))((((------((......).)))))...)))))))))))).. ( -34.20) >DroYak_CAF1 11479 101 + 1 UGCACACCGAUUUGUUUGCAGUGCAUGGCCUUUGAUGGUGGAGGUGGUGGCGUCAAC-CCACAGUCACAGUCACAAUCAAACUGUAAACACCCCACCGCAAC (((((..(((.....)))..)))))......(((.((((((.((((((((.(....)-))))....(((((.........)))))...))))))))))))). ( -32.90) >consensus UGCACACUAAUUUGUUUGCAGUGCAUGGCCUUUGGUGGUGGUGGAGGUGGCGUCAAC_CCACAG______CCACAAUCAAACUGUAAACACCCCACCGCAAC (((((..(((.....)))..))))).........(((((((.((.(((((.(....).))))..........(((.......)))...).)))))))))... (-23.12 = -22.88 + -0.24)
Location | 3,153,497 – 3,153,597 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 86.71 |
Mean single sequence MFE | -30.12 |
Consensus MFE | -21.70 |
Energy contribution | -22.54 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.12 |
Mean z-score | -1.67 |
Structure conservation index | 0.72 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570647 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3153497 100 + 22407834 UUUGGUGGUGUUGGAGGUGGCGUCAAC-CCACAG------CCACAAUCAAACUGUAAACACCCCACCGCAACCACAA-----CAAAAAUGAAGGGAACGUAGUUUCAGGGGA ..(((.((((((((..((((.(....)-))))..------))(((.......))).)))))))))((.(........-----((....))...(((((...))))).).)). ( -24.40) >DroSec_CAF1 9074 106 + 1 UUUGGUGGUGGUGGAGGUGGCGUCAACCCCACAG------CCACAAUCAAACUGUAAACACCCCACCGCAACCACAAAAAAAAAAAAAUGAAGGGAAGGGACUUUCAGGGGA ..((((.(((((((.((((((............)------))(((.......)))....)))))))))).))))..............((((((.......))))))..... ( -30.90) >DroSim_CAF1 10186 103 + 1 UUUGGUGGUGGUGGAGGUGGCGUCAAC-CCACAG------CCACAAUCAAACUGUAAACACCCCACCGCAACCACAAAAA--CAAAAAUGAAGGGAAGGGACUUUCAGGGGA ..((((.(((((((.((((((......-.....)------))(((.......)))....)))))))))).))))......--......((((((.......))))))..... ( -31.00) >DroEre_CAF1 8420 99 + 1 UUUGGUGGUGGAGGUGGUGGCGUCAGC-CCACAG------UCACAAUCGAACUGUAAACACCCCACUGCAACCACAAC-----AAAAAUGG-GGGAGGGGACUUUCAGGGGA ....(..((((.(((((.(((....))-))((((------((......).)))))...))))))))..)..((....(-----(....)).-(..((....))..).))... ( -34.40) >DroYak_CAF1 11509 107 + 1 UUUGAUGGUGGAGGUGGUGGCGUCAAC-CCACAGUCACAGUCACAAUCAAACUGUAAACACCCCACCGCAACCACAACA---CAAAAAUGG-GGAAAGGGACUGCCAGGGGA .(((.((((((.((((((((.(....)-))))....(((((.........)))))...)))))))))))))((.(..((---......)).-.)...((.....)).))... ( -29.90) >consensus UUUGGUGGUGGUGGAGGUGGCGUCAAC_CCACAG______CCACAAUCAAACUGUAAACACCCCACCGCAACCACAAAA___CAAAAAUGAAGGGAAGGGACUUUCAGGGGA ..((((.(((((((.((((..((.......))..........(((.......)))...))))))))))).))))..............((((((.......))))))..... (-21.70 = -22.54 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:56 2006