Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,149,217 – 3,149,318 |
Length | 101 |
Max. P | 0.629492 |
Location | 3,149,217 – 3,149,318 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 89.75 |
Mean single sequence MFE | -19.79 |
Consensus MFE | -17.78 |
Energy contribution | -17.87 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.14 |
Mean z-score | -1.31 |
Structure conservation index | 0.90 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.629492 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3149217 101 - 22407834 UUAUUAUUUAUAUUUGCUUUUUACUUGCUCUUUUCACAGACUAUCCGCCCGCUGAUAGUUAUACCGGUUAUCGGGUGACUCCACCCCAAAUCAACGGCGGC .............(((((....................(((((((.(....).))))))).....((((...(((((....)))))..))))...))))). ( -19.80) >DroSec_CAF1 4804 101 - 1 UUAUUAUUUAUAUUUGCUUUUUACUUGCUCUUUCCACAGACUAUCCGCCCGCUGAUAGUUAUACCGGUUAUCGGGUGACUCCACCCCAAAUCAACGGCAGC .............(((((....................(((((((.(....).))))))).....((((...(((((....)))))..))))...))))). ( -20.60) >DroSim_CAF1 4967 101 - 1 UUAUUAUUUAUAUUUGCUUUUUACUUGCUCUUUCCACAGACUAUCCGCCCGCUGAUAGUUAUACCGGUUAUCGGGUGACUCCACCCCAAAUCAACGGCAGC .............(((((....................(((((((.(....).))))))).....((((...(((((....)))))..))))...))))). ( -20.60) >DroEre_CAF1 3951 100 - 1 UUAUUAUUUAUGUGUGCUUU-UACUUGCUCUUUUCACAGACUAUCCGCCCGCUGAUAGUUAUACCGGUUAUCGGGUGACUCCACCCCAAAUCAACGGCAGC ..........((((.((...-.....))......))))(((((((.(....).)))))))...(((......(((((....)))))........))).... ( -21.44) >DroYak_CAF1 6866 100 - 1 UUAUUAUUUAUAUUAGCUUU-UUCUUGCUCUUUUCACAGACUAUCCGCCCGCUGAUAGUUAUACCGGUUAUCGGGUGACUCCACCCCAAAUCAACGGCACC ....................-....((((.........(((((((.(....).))))))).....((((...(((((....)))))..))))...)))).. ( -20.00) >DroMoj_CAF1 4624 92 - 1 GUCUAACG--UAUUUGC------AUUGGUCUAUUCACAGACUAUCCGCCCGUUGAUAGUUAUACCGGUUAUCGGGUAACUCCACCCCAAAACAACAACAA- (((.((((--.....((------..((((((......))))))...)).)))))))((((((.(((.....)))))))))....................- ( -16.30) >consensus UUAUUAUUUAUAUUUGCUUU_UACUUGCUCUUUUCACAGACUAUCCGCCCGCUGAUAGUUAUACCGGUUAUCGGGUGACUCCACCCCAAAUCAACGGCAGC .........................((((.........(((((((.(....).))))))).....((((...(((((....)))))..))))...)))).. (-17.78 = -17.87 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:54 2006