Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,142,008 – 3,142,102 |
Length | 94 |
Max. P | 0.576784 |
Location | 3,142,008 – 3,142,102 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 88.05 |
Mean single sequence MFE | -23.48 |
Consensus MFE | -18.73 |
Energy contribution | -18.98 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.45 |
Structure conservation index | 0.80 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576784 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3142008 94 - 22407834 UAUAUA----------UAUGUAUACUAUUCCCUCUAGCUGAUCCACUAUUGGCUUGCCAUUUAUGAUUUAUGCUGGCGGCGGUGGCAUUUGUGUAUUGACUCAA ((((((----------.(((....((((..((.(((((.((((......(((....))).....))))...))))).))..))))))).))))))......... ( -22.50) >DroSec_CAF1 66771 88 - 1 UAU----------------GUGUACUAUUCCCACUAGCUGAUCCACUAUUGGCUUGCCAUUUAUGAUUUAUGCUGGCGGCGGUGGCAUUUGUGUAUUGACUCAA ...----------------.....((((..((.(((((.((((......(((....))).....))))...))))).))..))))...(((.((....)).))) ( -19.70) >DroSim_CAF1 70078 94 - 1 UAUGUA----------UAUGUAUACUAUUCCCACUAGCUGAUCCACUAUUGGCUUGCCAUUUAUGAUAUAUGCUGGCGGCGGUGGCAUUUGUGUAUUGACUCAA ...(((----------((((.((.((((..((.(((((..(((......(((....))).....)))....))))).))..)))).)).)))))))........ ( -21.70) >DroEre_CAF1 68388 104 - 1 GAUAUAUAUAUGUACAUAUGUAUACUAUUCCCACUAGCUGAUCCACUGUUGGUUUGCCAUUUAUGAUUUAUGCUGGUGGCGGUGGCAUUUGUGUAUUGACUCAA ((((((((..(((((....)))))((((..((((((((.((((......(((....))).....))))...))))))))..))))....))))))))....... ( -30.00) >consensus UAUAUA__________UAUGUAUACUAUUCCCACUAGCUGAUCCACUAUUGGCUUGCCAUUUAUGAUUUAUGCUGGCGGCGGUGGCAUUUGUGUAUUGACUCAA ........................((((..((.(((((.((((......(((....))).....))))...))))).))..))))...(((.((....)).))) (-18.73 = -18.98 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:53 2006