Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,126,592 – 3,126,712 |
Length | 120 |
Max. P | 0.748406 |
Location | 3,126,592 – 3,126,712 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.11 |
Mean single sequence MFE | -26.76 |
Consensus MFE | -20.73 |
Energy contribution | -21.35 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.15 |
Mean z-score | -1.93 |
Structure conservation index | 0.77 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.748406 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3126592 120 + 22407834 CUCUAUCAAUGGAUUUUGUUAGAUUGGAUGCUGCGUCCAUUGUUAUGGUUAAGUUUUGUCCAACUUCUAUGGUUUUCGUAGUACUUCGUCCUUUGUCUAUUGUCCUAGAGACUUCUUCAU (((((.((((((((......((..(((((((((((.((((.(...(((...........)))....).))))....))))))).))))..))..))))))))...))))).......... ( -28.50) >DroSec_CAF1 51556 120 + 1 CUCUAUCAAUGGAUUUUGUAAGAUUGGAUGCUGCGUCCAUUGUUAUGGUUAAAUUUUGUCCAGCUUGUAUGGUUUUUGUAGUACUUCGUCCUUUGUCUAUUGUCCUAGAGACUUCUUCAU (((((.((((((((.....(((..(((((((((((.((((.....(((...........)))......))))....))))))).))))..))).))))))))...))))).......... ( -29.10) >DroSim_CAF1 53573 120 + 1 CUCUAUCAAUGGAUUUUGUAAGAUUGGAUGCUGUGUCCAUUGUUAUGGUUAAAUUUUGUCCAGCUUGUAUGGUUUUUGUAUUACUUCGUCCUUUGUGUAUUGUCCUAGAGAAUUGUUCAU (((((.(((((.((.......((...(((((.....((((.....(((...........)))......)))).....)))))...)).......)).)))))...))))).......... ( -21.14) >DroEre_CAF1 53031 120 + 1 CUCUAUCAAUGAAAUUUCUAGGAUUGGAUGCUGAGUCUAUUGUUGUGGUUACAUUUUGUUCAGUUUCUAUGGUUUUUGUAGUACUUCGUCCUUUGUCUAUUGUCCUAGAGAAUUCUUCUU ..........(((.((((((((((.(((((..((((((((.(..((((..((..........))..))))..)....)))).)))))))))..........)))))))))).)))..... ( -28.30) >consensus CUCUAUCAAUGGAUUUUGUAAGAUUGGAUGCUGCGUCCAUUGUUAUGGUUAAAUUUUGUCCAGCUUCUAUGGUUUUUGUAGUACUUCGUCCUUUGUCUAUUGUCCUAGAGAAUUCUUCAU (((((.((((((((.....(((..(((((((((((.((((.....(((...........)))......))))....))))))).))))..))).))))))))...))))).......... (-20.73 = -21.35 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:52 2006