Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,126,391 – 3,126,482 |
Length | 91 |
Max. P | 0.500000 |
Location | 3,126,391 – 3,126,482 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 83.77 |
Mean single sequence MFE | -31.32 |
Consensus MFE | -19.92 |
Energy contribution | -21.92 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.18 |
Mean z-score | -2.22 |
Structure conservation index | 0.64 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3126391 91 + 22407834 UUUCCUGGCUCGGUCUCUCGACGUUG---CCAGAACACUUGGAACUCAGAAUGUCCAAGCCAGAUGGCAUGGAUAUGUGUUCCAGCAGGGGUAA ....(((((...(((....)))...)---)))).....(((((((.....(((((((.(((....))).)))))))..)))))))......... ( -33.50) >DroSec_CAF1 51355 91 + 1 UUUCCUGGCCCAGUUUCUCAACGUUG---CCGGAACACUUGGAACUCAGAAUGUCCAAGCCAGAUGGCAUGGAUAUGUGUUCCAGCAGGGGUAA .......((((.(((....))).(((---(.((((((((((.....))).(((((((.(((....))).)))))))))))))).)))))))).. ( -34.50) >DroSim_CAF1 52502 91 + 1 UUUCCUGGCCCAGUUUCUCAACGUUG---CCGGAACACUUGGAACUCAGAAUGUCCAAGCCAGAGGGCAUGGAUAUGUGUUCCAACCAGGGUAG ..((((((....(((((.........---..)))))..(((((((.....(((((((.(((....))).)))))))..)))))))))))))... ( -33.50) >DroEre_CAF1 52830 91 + 1 UUUCCUGGUCCAGUUUCUCAAUGUUG---CCGGUACACUUGGAACUCAGAAUGUCCAAGCCAGAUGGCAUGGAUAUGUGUUCCAGCAGGGGUAA .((((((((((.((..(.....)..)---).)).))..(((((((.....(((((((.(((....))).)))))))..)))))))))))))... ( -32.80) >DroYak_CAF1 53290 91 + 1 UUUCCUGGUCCAGUUUCUCCAUGUUG---CCGGAACACUUGGAACUCAGAAUAUCCAAGCCAGAUGGCAUGGAUAUGUGUUCGAGCAGGGGUAA .((((((.((..(((((..(.....)---..))))).....((((.....(((((((.(((....))).)))))))..)))))).))))))... ( -30.20) >DroAna_CAF1 56964 94 + 1 UUUCCUGCUCCAUAUUGUCCACUUCCCCUCCAGAACUCUUAAGGCUGAGGAUGUCAAGGCCCGAUGGAAUGGACAUGUGUUCGAUCAAAGGCAG ....(((((....((((..(((.(((..(((((....)....((((...(....)..))))...))))..)))...)))..))))....))))) ( -23.40) >consensus UUUCCUGGCCCAGUUUCUCAACGUUG___CCGGAACACUUGGAACUCAGAAUGUCCAAGCCAGAUGGCAUGGAUAUGUGUUCCAGCAGGGGUAA .((((((.....(((((..............)))))..(((((((.....(((((((.(((....))).)))))))..)))))))))))))... (-19.92 = -21.92 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:51 2006