Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,121,210 – 3,121,313 |
Length | 103 |
Max. P | 0.900059 |
Location | 3,121,210 – 3,121,313 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 80.64 |
Mean single sequence MFE | -33.10 |
Consensus MFE | -19.23 |
Energy contribution | -21.45 |
Covariance contribution | 2.22 |
Combinations/Pair | 1.20 |
Mean z-score | -2.66 |
Structure conservation index | 0.58 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.900059 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3121210 103 - 22407834 AUUGGAUUCG--CCGUUGAUUGCGAUGCGAUGCGAUUGCGAGAAAUGGCAUGGUAAAGGCUAAUAAAGUCGUUUCCAUCUGGAAAAAGUCGU--UGCCGACUUUAAU .(..((...(--(((((..(((((((((...)).)))))))..)))))).(((....((((.....))))....)))))..)..(((((((.--...)))))))... ( -33.20) >DroSec_CAF1 46209 103 - 1 AUUGGAUUCG--CCGUUGAUUGCGAUGCGGUGCGAUUGCGAGAAAUGGCAUGGAAAAGGCUAAUAAAGUCGUUUCCAUCUGGAAGAAGUUGC--UGCCGACUUUAAU .(..((...(--(((((..(((((((((...)).)))))))..)))))).((((((.((((.....)))).))))))))..)..(((((((.--...)))))))... ( -34.80) >DroSim_CAF1 46627 103 - 1 AUUGGAUUCG--CUGUUGAUUGCGAUGCGAUGCGAUUGCGAGAAAUGGCAUGGAAAAGGCUAAUAAAGUCGUUUCCAUCUGGAAAAAGUUGC--UGCCGACUUUAAU .(..((...(--(((((..(((((((((...)).)))))))..)))))).((((((.((((.....)))).))))))))..)..(((((((.--...)))))))... ( -31.50) >DroEre_CAF1 47189 103 - 1 AUUGGAUUCG--CCGUUGAUUGCGAUGCGAUGCGAUUGCAAGAAAUGGCAUGGAAGUGGCUUAUAAAGUCGUUUCCAUCUGGAAAAAGUCGG--UCCCGACUUUAAU .(..((...(--(((((..(((((((((...)).)))))))..)))))).(((((((((((.....)))))))))))))..)..(((((((.--...)))))))... ( -39.70) >DroYak_CAF1 47674 103 - 1 AUUGGCUUUG--CCGUUGAUUGCGAUGCGAUGCGAUUGCAAGAAAUGGCAUGAAAAAGGCUAAUAAAGUCGUUUCCAUCUGGAAAAAGUCGG--UCCCGACUUUAAU ((((((((((--(((((..(((((((((...)).)))))))..)))))))......))))))))........((((....))))(((((((.--...)))))))... ( -36.20) >DroAna_CAF1 51040 89 - 1 AUUGGAUUCACGCUGUCG-------------CCGACUGUGGCAAGUGGAAUGGAAAGCGCUAAUAAAGUUGU-UCCAUAUGGCU----CCGCUGUACGAAGUUUGAC .......(((.(((.(((-------------(((....)))).((((((((((((...(((.....)))..)-))))).....)----)))))....))))).))). ( -23.20) >consensus AUUGGAUUCG__CCGUUGAUUGCGAUGCGAUGCGAUUGCGAGAAAUGGCAUGGAAAAGGCUAAUAAAGUCGUUUCCAUCUGGAAAAAGUCGC__UGCCGACUUUAAU ............(((((..(((((((........)))))))..))))).(((((((.((((.....)))).)))))))......(((((((......)))))))... (-19.23 = -21.45 + 2.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:49 2006