Locus 1148

Sequence ID 2L_DroMel_CAF1
Location 3,121,210 – 3,121,313
Length 103
Max. P 0.900059
window1862

overview

Window 2

Location 3,121,210 – 3,121,313
Length 103
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 80.64
Mean single sequence MFE -33.10
Consensus MFE -19.23
Energy contribution -21.45
Covariance contribution 2.22
Combinations/Pair 1.20
Mean z-score -2.66
Structure conservation index 0.58
SVM decision value 1.01
SVM RNA-class probability 0.900059
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3121210 103 - 22407834
AUUGGAUUCG--CCGUUGAUUGCGAUGCGAUGCGAUUGCGAGAAAUGGCAUGGUAAAGGCUAAUAAAGUCGUUUCCAUCUGGAAAAAGUCGU--UGCCGACUUUAAU
.(..((...(--(((((..(((((((((...)).)))))))..)))))).(((....((((.....))))....)))))..)..(((((((.--...)))))))... ( -33.20)
>DroSec_CAF1 46209 103 - 1
AUUGGAUUCG--CCGUUGAUUGCGAUGCGGUGCGAUUGCGAGAAAUGGCAUGGAAAAGGCUAAUAAAGUCGUUUCCAUCUGGAAGAAGUUGC--UGCCGACUUUAAU
.(..((...(--(((((..(((((((((...)).)))))))..)))))).((((((.((((.....)))).))))))))..)..(((((((.--...)))))))... ( -34.80)
>DroSim_CAF1 46627 103 - 1
AUUGGAUUCG--CUGUUGAUUGCGAUGCGAUGCGAUUGCGAGAAAUGGCAUGGAAAAGGCUAAUAAAGUCGUUUCCAUCUGGAAAAAGUUGC--UGCCGACUUUAAU
.(..((...(--(((((..(((((((((...)).)))))))..)))))).((((((.((((.....)))).))))))))..)..(((((((.--...)))))))... ( -31.50)
>DroEre_CAF1 47189 103 - 1
AUUGGAUUCG--CCGUUGAUUGCGAUGCGAUGCGAUUGCAAGAAAUGGCAUGGAAGUGGCUUAUAAAGUCGUUUCCAUCUGGAAAAAGUCGG--UCCCGACUUUAAU
.(..((...(--(((((..(((((((((...)).)))))))..)))))).(((((((((((.....)))))))))))))..)..(((((((.--...)))))))... ( -39.70)
>DroYak_CAF1 47674 103 - 1
AUUGGCUUUG--CCGUUGAUUGCGAUGCGAUGCGAUUGCAAGAAAUGGCAUGAAAAAGGCUAAUAAAGUCGUUUCCAUCUGGAAAAAGUCGG--UCCCGACUUUAAU
((((((((((--(((((..(((((((((...)).)))))))..)))))))......))))))))........((((....))))(((((((.--...)))))))... ( -36.20)
>DroAna_CAF1 51040 89 - 1
AUUGGAUUCACGCUGUCG-------------CCGACUGUGGCAAGUGGAAUGGAAAGCGCUAAUAAAGUUGU-UCCAUAUGGCU----CCGCUGUACGAAGUUUGAC
.......(((.(((.(((-------------(((....)))).((((((((((((...(((.....)))..)-))))).....)----)))))....))))).))). ( -23.20)
>consensus
AUUGGAUUCG__CCGUUGAUUGCGAUGCGAUGCGAUUGCGAGAAAUGGCAUGGAAAAGGCUAAUAAAGUCGUUUCCAUCUGGAAAAAGUCGC__UGCCGACUUUAAU
............(((((..(((((((........)))))))..))))).(((((((.((((.....)))).)))))))......(((((((......)))))))... (-19.23 = -21.45 +   2.22) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:49 2006