| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,118,993 – 3,119,094 |
| Length | 101 |
| Max. P | 0.994180 |
| Location | 3,118,993 – 3,119,094 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 70.41 |
| Mean single sequence MFE | -17.59 |
| Consensus MFE | -6.35 |
| Energy contribution | -6.38 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.76 |
| Structure conservation index | 0.36 |
| SVM decision value | 2.46 |
| SVM RNA-class probability | 0.994180 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3118993 101 + 22407834 UCAAUCUCCAAUCUCGUCAAAUGGACUAACAACUUUAUGCUUGACCCGCAACACAUGGCUCAA-AUCAGCCGC--AAGGCACAAAACUUGUCUAAUUCAUUAAA-------- ...................((((((.((((((.(((....((((.(((.......))).))))-....(((..--..)))...))).)))).)).))))))...-------- ( -17.10) >DroPse_CAF1 53121 97 + 1 UCAAUUU-------------AUCGGCCAAAAACUCUAAACAGAGC-CCCAACCAGUUGGCCGA-AUCUGCCCCCAAAGGCACAAAAGUUGAUUAAUUAACAAAAAAAAAAAA (((((((-------------.((((((((...((((....)))).-.........))))))))-...((((......))))...)))))))..................... ( -23.12) >DroSec_CAF1 44033 101 + 1 UCCAUCUCCAAUCUCUUCAAAUGGGCUAACCACUUUAUGUUUGACCCGCAACACAUGGCUCAA-AUCAGCCAC--AAGGCACAAAACUUGUCUAAUUCAUUAAA-------- ......................((((.(((........))).).))).........((((...-...))))((--(((........))))).............-------- ( -14.30) >DroEre_CAF1 44979 90 + 1 UCAAUCUCC-----------AUGGGCUAACAACUUUAUGUUUGACCCGUAACACAUUGCUCAA-AUCUGCCAC--AAGGCACAAAACUUGUUUAAUUCAUUAAU-------- .........-----------((((((.((((......)))).).)))))..............-...((((..--..)))).......................-------- ( -13.30) >DroYak_CAF1 45436 91 + 1 UCAAUCUCC-----------AUGGGCCAACAACUUCAUGUUUGACCCGUAACACAUUGCUCAAAAUCUGCCAC--AAGGCACAAAACUUGUUUAAUUCGUUAAA-------- .........-----------((((((.((((......)))).).)))))(((..((((..(((....((((..--..))))......)))..))))..)))...-------- ( -14.60) >DroPer_CAF1 52824 92 + 1 UCAAUUU-------------AUCGGCCAAAAACUCUAAACAGAGC-CCCAACCAGUUGGCCGA-AUCUGCCCCCAAAGGCACAAAAGUUGAUUAAUUAACAAAAAAA----- (((((((-------------.((((((((...((((....)))).-.........))))))))-...((((......))))...)))))))................----- ( -23.12) >consensus UCAAUCUCC___________AUGGGCCAACAACUUUAUGCUUGACCCGCAACACAUUGCUCAA_AUCUGCCAC__AAGGCACAAAACUUGUUUAAUUCAUUAAA________ .....................(((((.....................((((....)))).........(((......))).........))))).................. ( -6.35 = -6.38 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:48 2006