Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,118,076 – 3,118,189 |
Length | 113 |
Max. P | 0.650184 |
Location | 3,118,076 – 3,118,189 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 87.15 |
Mean single sequence MFE | -23.53 |
Consensus MFE | -17.06 |
Energy contribution | -17.38 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.14 |
Mean z-score | -1.79 |
Structure conservation index | 0.73 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650184 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3118076 113 - 22407834 AAUUAAAUUUCCAUUGCAAGUAAUUGGAUUUGUGGGGAAAUUGCCUUUGCUGGGCUGGCAUUAACUACUCAUAAAUCAAAAUGUGCUUUCAACAUUAAAACUCGUAUCU--ACGA .............(((.(((((....((((((((((.....((((...((...)).)))).......))))))))))......))))).))).........((((....--)))) ( -24.20) >DroSec_CAF1 43132 110 - 1 AAUUAAAUUUCCAUUGCAGGUAAUUGGAUUUGUGGGUGAAUUGCCUUUGCU-----GGCAUUAACUACUCAUAAAUCAAAAUGUGCUUUCAACAUUUAACUUUUUAUCUUCACGA ..............((.((((((...((((((((((((...((((......-----)))).....)))))))))))).((((((.......))))))......)))))).))... ( -27.00) >DroSim_CAF1 43558 97 - 1 AAUUAAAUUUCCAUUGCAGGUAAUUGGAUUUGUGGGUGAAUUGCCUUUGCU-----GGCAUUAACUACUCAUAAAUCAAAAUGUGCUUUCAACAUUUAA-------------CGA ..((((((.......(((.((.....((((((((((((...((((......-----)))).....))))))))))))...)).))).......))))))-------------... ( -24.94) >DroEre_CAF1 44050 107 - 1 AAUUAGAUUUCCAUUGCAGGAAAUUGGAUUUGCGGGGAAAUUGCCUUUGCU-----GGCAUUAACUAUUCAUAAAUCAAAAUGUGCUUUCAACAUUUAAC-UCAUUUCU--ACGA ((((.(((((((......))))))).))))..((..(((((((((......-----))))..................((((((.......))))))...-..))))).--.)). ( -22.00) >DroYak_CAF1 44482 107 - 1 AAUUAAAUUUCCAUUGCUGGUAAUUGGAUUUGUAGGGAAAUUGCCUUUGCU-----GGCAUCAACUACUCAUAAAUCAAAAUGUGCUUUCAGCAUUUAAC-UCAUUUCU--ACGA ..............((((((((....(((((((..(.....((((......-----)))).......)..)))))))......)))...)))))......-........--.... ( -19.50) >consensus AAUUAAAUUUCCAUUGCAGGUAAUUGGAUUUGUGGGGAAAUUGCCUUUGCU_____GGCAUUAACUACUCAUAAAUCAAAAUGUGCUUUCAACAUUUAAC_UCAUAUCU__ACGA .............(((.(((((....((((((((((.....((((...........)))).......))))))))))......))))).)))....................... (-17.06 = -17.38 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:47 2006