Locus 1145

Sequence ID 2L_DroMel_CAF1
Location 3,114,269 – 3,114,376
Length 107
Max. P 0.895047
window1859

overview

Window 9

Location 3,114,269 – 3,114,376
Length 107
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 96.17
Mean single sequence MFE -30.58
Consensus MFE -28.58
Energy contribution -27.86
Covariance contribution -0.72
Combinations/Pair 1.13
Mean z-score -1.36
Structure conservation index 0.93
SVM decision value 0.98
SVM RNA-class probability 0.895047
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3114269 107 - 22407834
GCUGGCUGGUAAUACCCCUUCCGGAGAGGGGUCUUUGCUAUUUGGUAAUCGUUUUGAGACCGCUAAGCAAAGUCUGACAAACUGAUCAAACAGAAUGUGACAAACAA
((((((((((((.(((((((.....)))))))..))))))...(((..((.....)).)))))).)))...(((..(((..(((......)))..))))))...... ( -29.00)
>DroSec_CAF1 39359 107 - 1
GCUGGCUGGUAAUACCCCUUCCGCAGAGGGGUCUUUGCCAUUUGGUAAUCGUUUUGAGACCGCUAAGCAAAGUCUGACAAACUGAUCAAACAGAAUGUGGCAAACAA
((((((((((((.(((((((.....)))))))..))))))...(((..((.....)).)))))).)))...(((..(((..(((......)))..))))))...... ( -30.70)
>DroSim_CAF1 39746 107 - 1
GCUGGCUGGUAAUACCCCUUCCGCAGAGGGGUCUUUGCCAUUUGGUAAUCGUUUUGAGACCGCUAAGCAAAGUCUGACAAACUGAUCAAACAGAAUGUGGCAAACAA
((((((((((((.(((((((.....)))))))..))))))...(((..((.....)).)))))).)))...(((..(((..(((......)))..))))))...... ( -30.70)
>DroEre_CAF1 39955 107 - 1
GCUGGUUGGUAAUACCCCUUCCGGAGAGGGGUCUUUGCUAUUUGGUAAUUCUUUUGAGACCGCUAAGCAAAGUCUGACAAACUGAUCAAACAGAAUGUGGUAAACAA
..((((..((...(((((((.....)))))))(((((((...((((...((....)).))))...)))))))........))..)))).......(((.....))). ( -29.10)
>DroYak_CAF1 40631 107 - 1
GCUGGCUGGUAAUACCCCUUCCGGAGAGGGGUCUUUGCCAUUUGGUAAUGCUUUUGAGACCGCUAAGCAAAGUCUGACAAGCUGAUCAAACAGAAUGUGGCAAACAA
.(((..((((((.(((((((.....)))))))..))))))((((((...((((.(.((((.((...))...)))).).))))..)))))))))..(((.....))). ( -33.40)
>consensus
GCUGGCUGGUAAUACCCCUUCCGGAGAGGGGUCUUUGCCAUUUGGUAAUCGUUUUGAGACCGCUAAGCAAAGUCUGACAAACUGAUCAAACAGAAUGUGGCAAACAA
((((((((((((.(((((((.....)))))))..))))))...(((............)))))).)))...(((..(((..(((......)))..))))))...... (-28.58 = -27.86 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:46 2006