Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,113,027 – 3,113,141 |
Length | 114 |
Max. P | 0.821003 |
Location | 3,113,027 – 3,113,141 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 83.21 |
Mean single sequence MFE | -31.76 |
Consensus MFE | -16.88 |
Energy contribution | -17.60 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.14 |
Mean z-score | -2.65 |
Structure conservation index | 0.53 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.821003 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3113027 114 - 22407834 AAAACACAAGUAAAUAAGAAAUGCAACGAAAAUCGUUGGGGAAUACGUUGUU-UGGGGGAUAAAUCCCUCAAACGUUUAGAUCUCACAAUCACCCACUGCCA---CUCUCCUUGUAGA .....(((((.............(((((.....)))))(((........(((-(((((((....)))))))))).....(((......))).))).......---.....)))))... ( -30.30) >DroSec_CAF1 38143 118 - 1 AAAACACAAUAAAGCAAGAAAUGCAACGAAAAUCGAUGGGGAAUACGUUGUUUUGGGGGAUAAAUCCCUCAAACGUUUGGAUCGCAAAAUUCCCCACUGCCAUCUCCUUCCUUGUAGA .....((((..(((..(((...(((.((.....)).((((((((...(((((((((((((....)))))))))..........)))).)))))))).)))..))).)))..))))... ( -31.50) >DroSim_CAF1 38499 117 - 1 AAAACACAAUAAAGCAAGAAAUGCAACGAAAAUCGAGGGGGAAUACGUUGUU-UGGGGGAUAAAUCCCUCAAACGUUUGGAUCGUCCAAUUCCCCACUGCCAUCUCCUUCCUUGUAGA .....((((..(((..(((...(((.((.....))..(((((((.....(((-(((((((....))))))))))...(((.....))))))))))..)))..))).)))..))))... ( -36.40) >DroEre_CAF1 38791 111 - 1 A-AUCCCAAUUAUCUAGGUAAUGCAACGGAAGUCGGUGGGGAACACGGUGUUUUGGGGGAUAAAUCCCUCAAACGUUUGGAUUCCACAAU--GCCACUGCCAUCU----UCUUGUAGA .-......(((((....)))))(((..(((((.((((((((((..(((...(((((((((....)))))))))...)))..)))).....--.))))))....))----))))))... ( -31.20) >DroYak_CAF1 39407 112 - 1 AAAUACCAAUUAACUAAGAAAUGCAACGGAAAUCAAUGGGGAAUACGUUGUUUAGGGGGAUAAAUCCCUCAAACGUUUGGAUUUCCAAAU--CCCACUGCCAUCU----CCUUGUAGA .....................(((((.(((.((((.((((.........((((.((((((....))))))))))((((((....))))))--)))).))..)).)----))))))).. ( -29.40) >consensus AAAACACAAUUAACUAAGAAAUGCAACGAAAAUCGAUGGGGAAUACGUUGUUUUGGGGGAUAAAUCCCUCAAACGUUUGGAUCGCACAAU__CCCACUGCCAUCUC__UCCUUGUAGA .............(((((....((((((....((......))...))))))(((((((((....))))))))).....................................)))))... (-16.88 = -17.60 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:45 2006