Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,107,883 – 3,107,974 |
Length | 91 |
Max. P | 0.500000 |
Location | 3,107,883 – 3,107,974 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 91.21 |
Mean single sequence MFE | -18.60 |
Consensus MFE | -13.72 |
Energy contribution | -14.44 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.13 |
Mean z-score | -1.64 |
Structure conservation index | 0.74 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3107883 91 + 22407834 AAACUAUGAAUCAUUUAUGUGUUAUUUCUGACCCGCCUGCAAUUUGCAGUUUCAAUAGACUAUAGAUAACAUUAAAUGAUUGAUUUUUGAU .....((.(((((((((.((((((((((((......((((.....))))......)))).....))))))))))))))))).))....... ( -20.00) >DroSec_CAF1 33181 91 + 1 AAACUAUGAAUCAUUUAUGUGCAUAGUCUGACCCGUCUGCAAUUUGUAGUUUCAAUGGACUAUAGAUAACAUUAAAUGAUUGAUUUUUGAU .....((.((((((((((((.((((((((.......((((.....)))).......))))))).)...))).))))))))).))....... ( -20.84) >DroSim_CAF1 33383 91 + 1 AAACUAUGAAUCAUUUAUGUGCAUAGUCUGACCCGUCUGCAAUUUGUAGUUUCAAUGGACUAUAGAUAACAUUAAAUGAUUGAUUUUUGAU .....((.((((((((((((.((((((((.......((((.....)))).......))))))).)...))).))))))))).))....... ( -20.84) >DroEre_CAF1 33588 87 + 1 AAACUAUGAAUCAUUUAUGUGAAGAGUCUGACC----AGCAAUUUGUAGUUUCAAUGGACUAUAGAUAACACUCAAUGAUUGAUUUUUGAU .....((.(((((((...(((....(.((....----))).((((((((((......))))))))))..)))..))))))).))....... ( -16.00) >DroYak_CAF1 34081 91 + 1 AAACUAUGAGUCAUUUAUGUGAAGAGUCUGACCCGCCUGCAAUUUGUAGUUUCAAUGGACUAUAGAUAACACUCAAUGAUUGAAUUUUGAU ......(.(((((((...(((.((.((.......))))...((((((((((......))))))))))..)))..))))))).)........ ( -15.30) >consensus AAACUAUGAAUCAUUUAUGUGAAGAGUCUGACCCGCCUGCAAUUUGUAGUUUCAAUGGACUAUAGAUAACAUUAAAUGAUUGAUUUUUGAU ......(.((((((((((((....((((((......((((.....))))......)))))).......))).))))))))).)........ (-13.72 = -14.44 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:40 2006