Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,106,685 – 3,106,782 |
Length | 97 |
Max. P | 0.771305 |
Location | 3,106,685 – 3,106,782 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 91.23 |
Mean single sequence MFE | -24.86 |
Consensus MFE | -18.48 |
Energy contribution | -18.72 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -2.05 |
Structure conservation index | 0.74 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.771305 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3106685 97 + 22407834 GACAUUACGGAUAUAGAACAUUAGUGAGAUUCCUCUGUGUGUGCAAACAGUUGGUUACGCCUACUGACCAUUUUUCCCACUGAUGAUUUCCGUAAUA ...((((((((....((.((((((((.((.....((((........)))).((((((.......))))))....)).)))))))).)))))))))). ( -26.80) >DroSec_CAF1 31847 93 + 1 GGCACUACGGAUAUAGAACAUUAGUGAGAUUCCUCUGUG--UGGAAACUGUUUGUUACGCCUACUGACCAUUC--UCCACUAAUGAUUUCCGUAAUA .....((((((....((.(((((((((((....((.(((--.((.(((.....)))...))))).))....))--).)))))))).))))))))... ( -23.50) >DroSim_CAF1 32070 88 + 1 -----UACGGAUAUAGAACAUUAGUGAGAUUCCUCUGUG--UGGAAACUGUUUGUUACGCCUACUGACCAUUU--CCCACUGAUGAUUUCCGUAAUA -----((((((....((.(((((((((((....)))...--.(((((..(((.((.......)).)))..)))--)))))))))).))))))))... ( -22.00) >DroEre_CAF1 32310 93 + 1 GACACUACGGAUAUAGAACAUUAGUGAGAUUCCUCUGUG--UGGAAACGGUUGGUUACGCCUACUGACCAUUU--CCCACUGAUGAUUUCCGUAAUA .....((((((....((.(((((((((((....)))...--.(((((.(((..((.......))..))).)))--)))))))))).))))))))... ( -29.40) >DroYak_CAF1 32823 93 + 1 GGCACUACGGAUAUAGAACAUUAGUGAGAUUCCUCUGUG--GGGAAACAGUUCGUUACGCCUACUGACCAUUU--CCCACCGAUGAUUUCCGUAAUA .....((((((....((.((((...(((....))).(((--(((((.((((..(.....)..))))....)))--))))).)))).))))))))... ( -22.60) >consensus GACACUACGGAUAUAGAACAUUAGUGAGAUUCCUCUGUG__UGGAAACAGUUGGUUACGCCUACUGACCAUUU__CCCACUGAUGAUUUCCGUAAUA .....((((((....((.((((((((...((((.........))))...((..((.......))..)).........)))))))).))))))))... (-18.48 = -18.72 + 0.24)
Location | 3,106,685 – 3,106,782 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 91.23 |
Mean single sequence MFE | -25.72 |
Consensus MFE | -17.76 |
Energy contribution | -18.48 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.08 |
Mean z-score | -2.25 |
Structure conservation index | 0.69 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3106685 97 - 22407834 UAUUACGGAAAUCAUCAGUGGGAAAAAUGGUCAGUAGGCGUAACCAACUGUUUGCACACACAGAGGAAUCUCACUAAUGUUCUAUAUCCGUAAUGUC (((((((((...(((.(((((((....((((..(....)...)))).((((........)))).....))))))).))).......))))))))).. ( -25.50) >DroSec_CAF1 31847 93 - 1 UAUUACGGAAAUCAUUAGUGGA--GAAUGGUCAGUAGGCGUAACAAACAGUUUCCA--CACAGAGGAAUCUCACUAAUGUUCUAUAUCCGUAGUGCC (((((((((...((((((((.(--((...(((....)))............((((.--......))))))))))))))).......))))))))).. ( -25.10) >DroSim_CAF1 32070 88 - 1 UAUUACGGAAAUCAUCAGUGGG--AAAUGGUCAGUAGGCGUAACAAACAGUUUCCA--CACAGAGGAAUCUCACUAAUGUUCUAUAUCCGUA----- ...((((((...(((.((((((--(....(((....)))............((((.--......))))))))))).))).......))))))----- ( -20.80) >DroEre_CAF1 32310 93 - 1 UAUUACGGAAAUCAUCAGUGGG--AAAUGGUCAGUAGGCGUAACCAACCGUUUCCA--CACAGAGGAAUCUCACUAAUGUUCUAUAUCCGUAGUGUC (((((((((........(((((--(((((((..((.......))..))))))))).--))).(((....)))..............))))))))).. ( -29.50) >DroYak_CAF1 32823 93 - 1 UAUUACGGAAAUCAUCGGUGGG--AAAUGGUCAGUAGGCGUAACGAACUGUUUCCC--CACAGAGGAAUCUCACUAAUGUUCUAUAUCCGUAGUGCC (((((((((...(((..(((((--(((((((..((.......))..))))))))))--....(((....)))))..))).......))))))))).. ( -27.70) >consensus UAUUACGGAAAUCAUCAGUGGG__AAAUGGUCAGUAGGCGUAACAAACAGUUUCCA__CACAGAGGAAUCUCACUAAUGUUCUAUAUCCGUAGUGCC (((((((((...(((.((((((.......(((....)))............((((.........)))).)))))).))).......))))))))).. (-17.76 = -18.48 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:39 2006